CN185202

Overview
NameCN185202
Unique NameCN185202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y918_STAAC (UPF0051 protein SACOL0918 OS=Staphylococcus aureus (strain COL) GN=SACOL0918 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y880_STAAR (UPF0051 protein SAR0880 OS=Staphylococcus aureus (strain MRSA252) GN=SAR0880 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y851_STAA8 (UPF0051 protein SAOUHSC_00851 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00851 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y846_STAAM (UPF0051 protein SAV0846 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0846 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y822_STAA3 (UPF0051 protein SAUSA300_0822 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0822 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y799_STAAW (UPF0051 protein MW0799 OS=Staphylococcus aureus (strain MW2) GN=MW0799 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y788_STAAS (UPF0051 protein SAS0788 OS=Staphylococcus aureus (strain MSSA476) GN=SAS0788 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y778_STAAN (UPF0051 protein SA0778 OS=Staphylococcus aureus (strain N315) GN=SA0778 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y1857_STAS1 (UPF0051 protein SSP1857 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1857 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.012e-24
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++EGS+G
Sbjct:  337 NTSSTIVSKSISKDGGKVVYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465
[Close]
BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y778_STAAB (UPF0051 protein SAB0778 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0778 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.304e-23
Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = -2 
Query:  261 NTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEGSVG 647
            NT S I+SK IS    +  YRG+V    KA+ AR++ +CD+++L + + ++T PY +V N    +EHEA  SK+ E+QLFY   RGI  E+A   ++ GF      ELP E+  E+N+L+  ++E S+G
Sbjct:  337 NTSSTIVSKSISKNGGKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEDSIG 465
The following BLAST results are available for this feature:
BLAST of CN185202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
Y918_STAAC2.012e-2441.09UPF0051 protein SACOL0918 OS=Staphylococcus aureus... [more]
Y880_STAAR2.012e-2441.09UPF0051 protein SAR0880 OS=Staphylococcus aureus (... [more]
Y851_STAA82.012e-2441.09UPF0051 protein SAOUHSC_00851 OS=Staphylococcus au... [more]
Y846_STAAM2.012e-2441.09UPF0051 protein SAV0846 OS=Staphylococcus aureus (... [more]
Y822_STAA32.012e-2441.09UPF0051 protein SAUSA300_0822 OS=Staphylococcus au... [more]
Y799_STAAW2.012e-2441.09UPF0051 protein MW0799 OS=Staphylococcus aureus (s... [more]
Y788_STAAS2.012e-2441.09UPF0051 protein SAS0788 OS=Staphylococcus aureus (... [more]
Y778_STAAN2.012e-2441.09UPF0051 protein SA0778 OS=Staphylococcus aureus (s... [more]
Y1857_STAS12.012e-2441.09UPF0051 protein SSP1857 OS=Staphylococcus saprophy... [more]
Y778_STAAB1.304e-2340.31UPF0051 protein SAB0778 OS=Staphylococcus aureus (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185202 ID=CN185202; Name=CN185202; organism=Citrus sinensis; type=EST; length=654bp
GAGGGCCAAAAGGCGATCCCATTGCCACAAAACTTCCCGAATAAATTCCA
TTAAAATTACATGTTGTTCTTGAAATAAACAAGTATGTACAAAGCTGCAA
ACATGTAGTGTGATACTACTTTTAGAACATGTTTATTTAAGTTTACAAGA
TAAACAGTACACGTCCCAACATTATGCATTTACAGCCTTTCATAATCTGG
AACTCACAGATGTATCTAAACTTTTGTAGATAAACTTGATACCAAAATTC
CTTCCCTCTAACCTACTGATCCCTCGAGTTTCAAACTCATGAGTTGGTTC
ACCTCAGCACCAAACTCATCAGGCAGCTCATTGAACACATCTCGGCAGAA
TCCAGAAATCATGGCAGCCATAGCCTTCTCATAGTCAATTCCCCTCTGCT
GAAAGTAGAAAAGCTGGTCTTCACCAATTTTTGAGGTGCTGGCTTCGTGT
TCAACACGAGCGGTAGGATTCTTCACCTGGATGTAAGGATAGGTGTTGGC
GGCAGCAGTGTCACCGAGAAGCATTGAGTCACACTGCGAGGAGTTTCGAG
CATTCTCAGCCTTTGACTGTACCTGAACAAGCCCTCTATAACAATTTCTT
GAGTTCCCAACTGAAATACCCTTAGAAATAATCCGACTCCTCGTATTCTT
CCCC
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