CN185202

Overview
NameCN185202
Unique NameCN185202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185202 vs. ExPASy Swiss-Prot
Match: Y1385_PYRHO (UPF0051 protein PH1385 OS=Pyrococcus horikoshii GN=PH1385 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = -2 
Query:  270 GKNTRSRIISKGISVGNSRNCYRGLVQVQSKAENARNSSQCDSMLLGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGAEVNQLMSLKLEG 653
            G+  R    SK + +  S    RG  ++ ++A+  +    CD++LL D A   TYP +      A + HEA+  KI E++LFY   RG+  EKA   ++ GF   +  ++P EF  E+ +++ L + G
Sbjct:  319 GEGGRGINASKSVIMDESTVITRG--KIVAEAKKTKGHISCDALLLSDKARMETYPGLVSLVDEAELSHEAAIGKIKEEELFYLMSRGLSEEKATQLIVKGFVEPMLKDIPIEFVVEIKKIIELAVSG 444
The following BLAST results are available for this feature:
BLAST of CN185202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
Y1385_PYRHO1.598e-1331.25UPF0051 protein PH1385 OS=Pyrococcus horikoshii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185202 ID=CN185202; Name=CN185202; organism=Citrus sinensis; type=EST; length=654bp
GAGGGCCAAAAGGCGATCCCATTGCCACAAAACTTCCCGAATAAATTCCA
TTAAAATTACATGTTGTTCTTGAAATAAACAAGTATGTACAAAGCTGCAA
ACATGTAGTGTGATACTACTTTTAGAACATGTTTATTTAAGTTTACAAGA
TAAACAGTACACGTCCCAACATTATGCATTTACAGCCTTTCATAATCTGG
AACTCACAGATGTATCTAAACTTTTGTAGATAAACTTGATACCAAAATTC
CTTCCCTCTAACCTACTGATCCCTCGAGTTTCAAACTCATGAGTTGGTTC
ACCTCAGCACCAAACTCATCAGGCAGCTCATTGAACACATCTCGGCAGAA
TCCAGAAATCATGGCAGCCATAGCCTTCTCATAGTCAATTCCCCTCTGCT
GAAAGTAGAAAAGCTGGTCTTCACCAATTTTTGAGGTGCTGGCTTCGTGT
TCAACACGAGCGGTAGGATTCTTCACCTGGATGTAAGGATAGGTGTTGGC
GGCAGCAGTGTCACCGAGAAGCATTGAGTCACACTGCGAGGAGTTTCGAG
CATTCTCAGCCTTTGACTGTACCTGAACAAGCCCTCTATAACAATTTCTT
GAGTTCCCAACTGAAATACCCTTAGAAATAATCCGACTCCTCGTATTCTT
CCCC
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