CN185200

Overview
NameCN185200
Unique NameCN185200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 51/197 (25.89%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   59 LLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMG------LIKASNFELTMNDIQTWVSAALTDETTCSDGFEK---------NTVNGKVVRGQIVKIAHMTSNALALINSYAS 604
            ++A   H N + ++ + P ++T ST  +K  CS T +P  C  S+++  S   T P+ L   SL V +    S S +  K+SK    + R   A++ C + + D++D L  ++  +        + +S  E    D++TW+SA +TD  TC D  ++         N+   + ++  + +    TSN+LA+++   S
Sbjct:   47 VVATVVHKNKNESTPSPPPELTPSTS-LKAICSVTRFPESCISSISKLPSSNTTDPETLFKLSLKVIIDELDSISDLPEKLSKETEDE-RIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIE----DLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILS 237          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 53/208 (25.48%), Postives = 95/208 (45.67%), Query Frame = 2
Query:    8 KRAREKMESSSSKYFLILLAIFYHINSSSASRNVPSK----ITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAM----AKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVN-GKVVRGQIVKIAHMTSNALALINSYAS 604
            KR R  +  + S   LI + +   +  S    +  SK    + AS + +K  C+ T Y   C  +L ++     T P  L   + NVT+      AK +  +M      L    R   A+  C E +  ++DEL  S  E+G  +    +  + +++ W+SAA++ E TC +GF+    N G+ ++  +     +T N LA+I+  ++
Sbjct:   10 KRKRRYIVITISSVLLISMVVAVTVGVSLNKHDGDSKGKAEVNASVKAVKDVCAPTDYRKTCEDTLIKNGKNT-TDPMELVKTAFNVTMKQITDAAKKSQTIM-----ELQKDSRTRMALDQCKELMDYALDELSNSFEELGKFEFHLLDEALINLRIWLSAAISHEETCLEGFQGTQGNAGETMKKALKTAIELTHNGLAIISEMSN 211          
BLAST of CN185200 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 45/177 (25.42%), Postives = 85/177 (48.02%), Query Frame = 2
Query:   83 NSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL-AMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVNGKVVRGQIVKIA-HMTSNALALINSYASL 607
            N+S + + VP +I  +T  ++  C+ T Y   C  SL + AS   T P  L     NVT+ ++  S     ++++           A++ C + ++D+ D+L+K +           E  + D++ W+S ++  + TC D FE+          +I K +  +TSN LA+I + ++L
Sbjct:   36 NTSHSEKIVPVQIKTATTAVEAVCAPTDYKETCVNSLMK-ASPDSTQPLDLIKLGFNVTIRSIEDSIKKASVELTAKAANDKDTKGALELCEKLMNDATDDLKKCLDNFDGFSIPQIEDFVEDLRVWLSGSIAYQQTCMDTFEETNSKLSQDMQKIFKTSRELTSNGLAMITNISNL 211          
The following BLAST results are available for this feature:
BLAST of CN185200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PME1_ARATH1.384e-1125.89Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME21_ARATH1.808e-1125.48Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME58_ARATH8.972e-1125.42Probable pectinesterase/pectinesterase inhibitor 5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185200 ID=CN185200; Name=CN185200; organism=Citrus sinensis; type=EST; length=727bp
GAGGAGAAAAAGAGCAAGAGAGAAAATGGAATCTTCATCATCAAAATATT
TCCTCATTTTACTAGCCATTTTTTACCACATAAACTCAAGCTCAGCATCC
AGAAATGTCCCCTCTAAAATTACAGCTAGCACTGAGTTCATCAAAACATC
TTGCAGTTCAACAACCTATCCAACACTTTGCTATAAATCCCTTGCTAGAC
ATGCAAGCTTAATCCAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTC
AACGTGACCCTTGCAATGGCTAAATCAACGTCAGCCGTCATGTTAAAGAT
ATCGAAAAGCCTTGGAATGAAGCCTAGAGAGGCGGAAGCCATGCAAGATT
GTTTGGAGGAGCTGAGTGATTCAGTTGATGAACTCAGAAAGTCTATTGGC
GAAATGGGTCTGATCAAAGCTTCTAACTTTGAACTCACAATGAATGATAT
ACAGACTTGGGTTAGTGCTGCTTTGACTGATGAGACTACTTGCAGCGATG
GATTTGAAAAAAATACGGTTAATGGGAAAGTCGTGAGAGGCCAGATTGTG
AAGATTGCCCATATGACTAGCAATGCCTTGGCTTTGATCAATAGTTATGC
TTCGCTTCATGCTTAATTAGAAACTGTGATGATGATGAGCTTCAGCATTA
ATGTTAACTCACATATGTGTATATTGTTAATCTTTTGTCGGGAAATAAAA
TTCTATTTAATAAAAAAAAAAAAAAAA
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