DC887726

Overview
NameDC887726
Unique NameDC887726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.212e-21
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = -2
Query:  184 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 435
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  KVNTDE   ++ ++GIRSIPT++  K+GE    ++G   K  L   + K L
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.212e-21
Identity = 41/86 (47.67%), Postives = 64/86 (74.42%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   54 PVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.212e-21
Identity = 41/86 (47.67%), Postives = 64/86 (74.42%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   54 PVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.212e-21
Identity = 41/86 (47.67%), Postives = 64/86 (74.42%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   54 PVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.212e-21
Identity = 41/86 (47.67%), Postives = 64/86 (74.42%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   54 PVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.052e-20
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = -2
Query:  184 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 435
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A ++ + SIPT+++FK+GE  D V+G  PK  L   IEK L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 2.680e-20
Identity = 38/86 (44.19%), Postives = 60/86 (69.77%), Query Frame = -2
Query:  184 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 441
            PVLV+FWA WCGPCR I P ++ ++ +Y  K++  K+N DE+P  A +YG+ SIPT+ +++ GE   T++GA PK+ +   +E F+
Sbjct:   23 PVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 108          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.501e-20
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = -2
Query:  184 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 435
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.501e-20
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = -2
Query:  184 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 435
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DC887726 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.572e-20
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = -2
Query:  184 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 435
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of DC887726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
THIO_HELPJ9.212e-2150.00Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO2_SHIFL9.212e-2147.67Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI9.212e-2147.67Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL69.212e-2147.67Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO579.212e-2147.67Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]
THIO_STAS12.052e-2050.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_STRCO2.680e-2044.19Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]
THIO_STAES3.501e-2048.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ3.501e-2048.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAAW4.572e-2047.62Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887726 EIC Citrus sinensis cDNA clone EIC0794 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887726 ID=DC887726; Name=DC887726; organism=Citrus sinensis; type=EST; length=442bp
AGTAGCTTTAGTANTGGANTCAGGAAACACAATCACATCTCCTCATAACT
ATACAAGGGCAGAAGATAATTTATTGTGGAAAGCAAAGTATCTTAACCCA
AGGCATAGTAAGCTACAAGGCAAACAAACAAATGCTACAGAGAGCCTGTT
TCTAGCAAACGCGTCCTTTACTTACCATGTCTACAAGAATTTCTCTATGC
TGGTGGTCAAAGTGGATTTAGGAACAGCACCAATCACTGTATCTTTCTTC
TCGCCATTCTTAAATATCATGACAGTTGGGATGCTCCTAATTCCATATCT
AGTAGCAATTGAAGGACTCTCATCAGTATTAACCTTATAGCATTTTAGCT
TCCCCACATATTGCTTTGATAGCTCATCAATAATAGGGTGGATCATCCGG
CAAGGCCCGCACCATGGAGCCCAGAATTCAACAAGCACAGGT
back to top