CN185160

Overview
NameCN185160
Unique NameCN185160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.174e-37
Identity = 77/158 (48.73%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  316 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKL 789
            K  KAFG++VTVISTSP K  EA+  LGAD FLVS D  ++ AA  TMD I++TVSA H +AP                P +PLE+P +A+V   + + G+ +GG+++ Q MLDF  +H I A++E+++MD +NTA+ERL K+DV+YRFVIDV  S L
Sbjct:  274 KFAKAFGMRVTVISTSPGKRQEALEHLGADEFLVSRDAGQMAAAAATMDGILNTVSAWHPIAPLFSLMKPMAQMVFVGGPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGSSL 431          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.872e-36
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = -3
Query:  277 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKLQ*VHCDVRAAVCS 789
            K GKAFG+KVTVIS+SP K  EA+ +LGADAFL S D   + AA  TMD IIDTVSA H L P                P  PL++P +A++   + V G+ +G + E Q MLDF  +H IAAD+E+V MD +N A+ RL ++DV+YRFV+DV  +    +H    AA  S
Sbjct:  196 KFGKAFGMKVTVISSSPAKRGEALGRLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAMPLQLPAYAIIEGGKRVAGNGVGSVAECQAMLDFAGEHGIAADVEVVAMDAVNAALGRLERNDVRYRFVVDVAGT----MHAAAAAAASS 362          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.532e-34
Identity = 77/156 (49.36%), Postives = 97/156 (62.18%), Query Frame = -3
Query:  322 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNS 789
            K GKAFG+KVTVIS+SP K  EA+ +LGADAFL S D   + AA  TMD IIDTVSA H L P                P  PL++P  A++   + V GS  G + E Q MLDF  +H IAAD+E+V M  +N A+ RL ++DV+YRFVIDV  +
Sbjct:  196 KFGKAFGMKVTVISSSPAKREEALERLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAAPLQLPAIAIIDGGKRVAGSGGGSVAECQAMLDFAGEHGIAADVEVVAMGDVNAALGRLERNDVRYRFVIDVAGT 351          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.642e-34
Identity = 77/158 (48.73%), Postives = 103/158 (65.19%), Query Frame = -3
Query:  316 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKL 789
            K+ KAFGL VTVIS+S KK+ EA+  LGADA+LVS D  K+  A  ++DYI+DT+   H L P               +  +PL      L+  RR + GS IGGM+ETQE LDFCA+  +++ IE+V +D INTA+ERL K+DV+YRFV+DV  S+L
Sbjct:  198 KIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPPLILGRRSIAGSFIGGMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGSEL 355          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.623e-34
Identity = 77/158 (48.73%), Postives = 102/158 (64.56%), Query Frame = -3
Query:  316 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKL 789
            K+ KAFGL VTVIS+S KK+ EA+  LGADA+LVS D  K+  A  ++DYI+DT+   H L P               +  +PL      L+  RR + GS IG M+ETQE LDFCA+  +++ IE+V +D INTA+ERL K+DV+YRFV+DV  SKL
Sbjct:  198 KIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGSKL 355          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.257e-33
Identity = 76/158 (48.10%), Postives = 102/158 (64.56%), Query Frame = -3
Query:  316 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKL 789
            K+ KAFGL VTVIS+S KK+ EA+  LGADA+LVS D  K++ A  ++DYI+DT+   H L P               +  +PL      L+  RR + GS IG M+ETQE LDFCA+  +++ IE+V +D INTA+ERL K+DV+YRFV+DV  S L
Sbjct:  198 KIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVARSNL 355          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.144e-33
Identity = 76/158 (48.10%), Postives = 102/158 (64.56%), Query Frame = -3
Query:  316 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKL 789
            K+ KAFGL VTVIS+S KK+ EA+  LGADA+LVS D  K++ A  ++DYI+DT+   H L P               +  +PL      L+  RR + GS IG M+ETQE LDFCA+  +++ IE+V +D INTA+ERL K+DV+YRFV+DV  S L
Sbjct:  198 KIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVAASNL 355          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.144e-33
Identity = 78/158 (49.37%), Postives = 101/158 (63.92%), Query Frame = -3
Query:  316 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKL 789
            K+ KA G  VTVIS+S KK+ EAI  LGADA+LVSSD  +++ A  ++DYIIDTV   H L P               +   PL+     ++  R+ + GS IG MKET+EMLDFC +  I + IE+V+MD INTA ERL K+DV+YRFV+DV  SKL
Sbjct:  199 KLAKAMGHHVTVISSSDKKKEEAIDHLGADAYLVSSDATQMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSMKETEEMLDFCNEKGITSTIEVVKMDYINTAFERLEKNDVRYRFVVDVAGSKL 356          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.370e-32
Identity = 73/158 (46.20%), Postives = 101/158 (63.92%), Query Frame = -3
Query:  316 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKL 789
            K+ KA G  VTVIS+S KK +EA+  LGADA+LVSSD   +K A  ++DYI DT+  VH L P               +   PL+     ++  R+ + GS IG MKET+EML+FC +  + + IE+++MD +NTA+ERL K+DV+YRFV+DV  SKL
Sbjct:  197 KIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFISPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVAGSKL 354          
BLAST of CN185160 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.280e-32
Identity = 75/158 (47.47%), Postives = 99/158 (62.66%), Query Frame = -3
Query:  316 KMGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXLPEKPLEVPIFALVGARRLVGGSNIGGMKETQEMLDFCAKHNIAADIELVRMDQINTAIERLAKSDVKYRFVIDVGNSKL 789
            K+ KA G  VTVIS+S KK  EA+  LGAD +LVSSD   ++ A   +DYIIDTV  VH L P               +   PL+     ++  R+ + GS IG MKET+EML+FC +  +A+ IE+++MD INTA ERL K+DV+YRFV+DV  SKL
Sbjct:  198 KIAKAMGHHVTVISSSDKKREEAMEHLGADEYLVSSDVESMQKAADQLDYIIDTVPVVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGVASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGSKL 355          
The following BLAST results are available for this feature:
BLAST of CN185160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CAD8C_ORYSJ4.174e-3748.73Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8D_ORYSJ7.872e-3646.78Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CAD8A_ORYSJ2.532e-3449.36Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH_PINTA5.642e-3448.73Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA9.623e-3448.73Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH2_PICAB1.257e-3348.10Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH7_PICAB2.144e-3348.10Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH1_ARACO2.144e-3349.37Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH_EUCBO2.370e-3246.20Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH_POPDE5.280e-3247.47Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006N21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185160 ID=CN185160; Name=CN185160; organism=Citrus sinensis; type=EST; length=839bp
GAGGTGCTCACATTTTCCTCCAATATAAGACATTAGTATTTTGAAATACT
ATCCCAACAAAATATAAGTTAGCTAGATACTTTGAATGCAAAAAGGTGTA
GATAAATTGTGATGCCATATATAACCATTAAACAAGAAGATAACAATAGT
AGCAAGAACACGGACCAAATATATCCACACCCAGGGGTGGGGTGGGGATT
GTGTCCTGTCACTCCATCAAACACACATGGTAAGCAGGAAACTTGAGCTT
ATTCTAGCATCCAGGCTCAAAGTAAATGAGCATACAGCGGCGCGCACATC
ACAATGTACCTACTGCAATTTGGAGTTCCCCACGTCAATAACAAAACGGT
ACTTGACATCAGACTTTGCAAGCCTTTCTATGGCTGTGTTAATTTGGTCC
ATCCGGACCAGTTCAATGTCTGCAGCAATGTTGTGCTTGGCGCAAAAGTC
CAACATCTCTTGTGTCTCCTTCATTCCTCCAATGTTGCTTCCTCCAACAA
GCCTCCGAGCCCCAACTAAAGCAAAAATAGGCACCTCTAGGGGCTTCTCA
GGCAAGCCCACGGTGACCAGCTTTCCATTCACTTTCAGCAGACCAAGTAG
TGGTGCAAGGGAATGAACCGCTGACACAGTGTCAATAATGTAATCCATAG
TGCCCATAGCAGCCTTAACTTTAGCAGGATCACTGGAAACAAGGAATGCA
TCAGCACCAAGTTTGCTGATCGCTTCACTCTCTTTTTTCGGAGAAGTACT
GATGACGGTGACTTTCAACCCAAAGGCCTTGCCCATTTTCACAGCAACAT
GGCCAAGCCCACCAAGTCCTGCTACACCCAAATGCTTAC
back to top