DC887700

Overview
NameDC887700
Unique NameDC887700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_HOLOB (10 kDa chaperonin OS=Holospora obtusa GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +R+LV+++    +T+ GI++P+ +  K   G VIAVGPGARD +GN I +  K+GD VL   + G  VKL  +DY + ++ ++ GT+
Sbjct:    6 PLGDRILVKRVEAEERTSGGIVIPDTAKEKPIEGTVIAVGPGARDPQGNLIALEVKQGDRVLFGKWSGTEVKLSGEDYIVMKESDVFGTI 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_DESAH (10 kDa chaperonin OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  101 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 373
            L P  +R+LVE++    KT  GI++P+ +  K   GKV+A G G   ++G  IP+  K GDT+L   YGG  VK+   DY + R +++LG +
Sbjct:    3 LRPLQDRILVERVQETEKTKGGIIIPDTAKEKPAEGKVVASGNGRVGEDGKLIPMDLKVGDTILFSKYGGTEVKIDGTDYLIMRQDDVLGVI 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_DESOH (10 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.684e-13
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +R+LV+++   +KT  GI++P+ +  K   GKV+AVG G   ++G  IP+  K+GD VL   YGG  VK+  ++Y + R+++ILG L
Sbjct:    5 PLHDRILVKRVEEETKTKGGIIIPDTAKEKPIEGKVMAVGNGRLGEDGKLIPLEVKKGDRVLFGKYGGTEVKMDGQEYLIMREDDILGIL 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_OPITP (10 kDa chaperonin OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.265e-12
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  101 RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 376
            ++ P  +RVLV+ I    +   GI++P+ +  K    KVIA+G G + ++G   P   K GD VL+  YGG  VKL EK Y L R+++ILG +
Sbjct:    5 KIKPIGDRVLVQHIEEKEQVRGGIIIPDSAKEKPQEAKVIALGTGKKGEDGKVTPFEVKVGDRVLISKYGGTEVKLDEKKYTLVREDDILGVI 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_STACT (10 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.652e-12
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  110 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEIL 373
            L P  NRV+++++     T +GI+L EK+  K N GKVIAVGPG     G  +    KEGDTV+   Y G  V++GE  Y +  +EE+L
Sbjct:    2 LKPLGNRVIIKRVESEQTTKSGIVLTEKAKEKSNEGKVIAVGPGRLLDNGERVTPEVKEGDTVVFEQYAGSEVQVGEDKYLVISEEEVL 90          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.157e-12
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = -3
Query:  101 RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 376
            +L P  +R++V+++   +KT  GI +PE +  K   G+V+AVG G R ++G  +P+  K GD VL   Y G  VK+  +DY + R+++ILG +
Sbjct:    2 KLRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGVI 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_DESPS (10 kDa chaperonin OS=Desulfotalea psychrophila GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.157e-12
Identity = 35/93 (37.63%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  101 RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 376
            ++ P  +R+LV+++    KT  GI++P+ +  K   G+V+AVGPG     G  + +  KEGD VL   YGG  VKL  +D+ + R+++ILG +
Sbjct:    2 KIRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVKLDGEDFLIMREDDILGIM 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH102_RHOPA (10 kDa chaperonin 2 OS=Rhodopseudomonas palustris GN=groS2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.157e-12
Identity = 34/92 (36.96%), Postives = 57/92 (61.96%), Query Frame = -3
Query:   95 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 367
            P  +RV+V++I    KT  GI++P+ +  K + G+++AVGPG RD+ G  IP+  K GD VL   + G  VK+  K+  + ++ +I+G + D
Sbjct:    5 PLHDRVVVKRIDAEEKTAGGIIIPDTAKEKPSQGEIVAVGPGGRDEAGKLIPIDLKVGDRVLFGKWSGTEVKIDGKELLIMKESDIMGVITD 96          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  110 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEIL 373
            L P  +RVLV+      KT  GI LP+ +  K   G+V+AVGPG R+ EG  IP+  K GD VL   Y G  VKLG  +Y L  + +IL
Sbjct:   11 LKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDIL 99          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  110 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEIL 373
            L P  +RVLV+      KT  GI LP+ +  K   G+V+AVGPG R+ EG  IP+  K GD VL   Y G  VKLG  +Y L  + +IL
Sbjct:   11 LKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDIL 99          
The following BLAST results are available for this feature:
BLAST of DC887700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CH10_HOLOB1.951e-1340.0010 kDa chaperonin OS=Holospora obtusa GN=groS PE=3... [more]
CH10_DESAH5.677e-1339.1310 kDa chaperonin OS=Desulfobacterium autotrophicu... [more]
CH10_DESOH9.684e-1340.0010 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH10_OPITP1.265e-1239.7810 kDa chaperonin OS=Opitutus terrae (strain DSM 1... [more]
CH10_STACT1.652e-1242.7010 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]
CH10_GEOSF2.157e-1237.6310 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH10_DESPS2.157e-1237.6310 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]
CH102_RHOPA2.157e-1236.9610 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH10_SYNJB4.806e-1244.9410 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA4.806e-1244.9410 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]

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Properties
Property NameValue
Genbank descriptionDC887700 EIC Citrus sinensis cDNA clone EIC0748 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887700 ID=DC887700; Name=DC887700; organism=Citrus sinensis; type=EST; length=450bp
ACAACATTAAATCAAATTCCTCAGACAATTAGTCTGTTACATTCGTTTTA
AAACAACCATAATTCCAACAATACCCATTCAGCTCAATGTACTAGTCATG
CAGAGTACCCAAAATTTCCTCGTCCCTATACAAATGGTAGTCTTTCTCAC
CGAGCTTGACATGATCGCCACCATAATTCGGTAGAAGAACGGTGTCACCT
TCCTTGAAGGCCACCGGAATGGTATTCCCCTCCTTGTCACGCGCACCCGG
GCCCACAGCAATCACTTTCCCAGAGTTCAGCTTGCTGGACTTTTCAGGGA
GGAGAATCCCGGCATTGGTTTTGGAAGGAGGTACGATTTTCTCGACGAGA
ACACGGTTCAAAGTTGGGATCAATCGCTTCGCCATCGCTTTGCTTTCTCT
GCAAAAATTAGGGCCTTTGGGACAGTGTTGCCACTGAAGAATGACGGGGT
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