DC887700

Overview
NameDC887700
Unique NameDC887700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH104_RHILO (10 kDa chaperonin 4 OS=Rhizobium loti GN=groS4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = -3
Query:  101 MAK-RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 385
            MAK +  P  +RV+V ++   SKT  GI++P+ +  K   G++IAVG GARD+ G  +P+  K GD +L   + G  VKL  +D  + ++ +I+G +
Sbjct:    1 MAKSKFRPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLVPLDVKAGDRILFGKWSGTEVKLNGEDLLIMKESDIMGII 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH105_RHILO (10 kDa chaperonin 5 OS=Rhizobium loti GN=groS5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = -3
Query:  101 MAK-RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 385
            MAK +  P  +RV+V ++   SKT  GI++P+ +  K   G++IAVG GARD+ G  +P+  K GD +L   + G  VKL  +D  + ++ +I+G +
Sbjct:    1 MAKSKFRPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDEAGKLVPLDVKAGDRILFGKWSGTEVKLNGEDLLIMKESDIMGII 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_PELUB (10 kDa chaperonin OS=Pelagibacter ubique GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  107 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILG 367
            P  +RVL+E +    KT  GI++P+ +  K   GKVIAVG GA+ ++G  IP+  K GD VL   + G  +K+  K+Y + ++ +I+G
Sbjct:    5 PLHDRVLIEVLDSSEKTAGGIIIPDTAQEKPQEGKVIAVGGGAKTEDGKLIPMDVKVGDKVLFGKWSGTEIKIDGKEYSIMKESDIMG 92          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH103_RHILO (10 kDa chaperonin 3 OS=Rhizobium loti GN=groS3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = -3
Query:  101 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 373
            L P  +RV+V ++   SKT  GI++P+ +  K   G++IAVG GARD+ G  +P+  K GD +L   + G  VKL  +D  + ++ +I+G +
Sbjct:    6 LRPLHDRVVVRRVESESKTAGGIIIPDTAKEKPQEGEIIAVGSGARDEAGKLVPLDVKAGDRILFGKWSGTEVKLNGEDLLIMKEADIMGII 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH103_BRAJA (10 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groS3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 34/92 (36.96%), Postives = 55/92 (59.78%), Query Frame = -3
Query:   95 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 367
            P  +RV+V++I    KT  GI++P+ +  K + G+VIAVGPG  D  G  IP+  + GD VL   + G  VK+  +D  + ++ +++G L D
Sbjct:    5 PLHDRVVVKRIDAEEKTAGGIIIPDTAKEKPSQGEVIAVGPGGHDDSGKLIPIDIEVGDRVLFGKWSGTEVKIDGQDLLIMKESDVMGVLTD 96          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_GEOSL (10 kDa chaperonin OS=Geobacter sulfurreducens GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  101 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 373
            L P  +R+LV++I   +KT  GI +P+ +  K   G+++AVG G + ++G  IPV  K GD VL   Y G  +K+  +++ + R+++ILG +
Sbjct:    3 LRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIKIEGQEFLIMREDDILGVI 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BRUSU (10 kDa chaperonin OS=Brucella suis GN=groS PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  107 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILG 367
            P  +RV+V ++   +KT  GI++P+ +  K   G+V+A G GARD+ G  +P+  K GD VL   + G  VK+G +D  + ++ +ILG
Sbjct:    8 PLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BRUSI (10 kDa chaperonin OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  107 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILG 367
            P  +RV+V ++   +KT  GI++P+ +  K   G+V+A G GARD+ G  +P+  K GD VL   + G  VK+G +D  + ++ +ILG
Sbjct:    8 PLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BRUO2 (10 kDa chaperonin OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  107 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILG 367
            P   RV+V ++   +KT  GI++P+ +  K   G+V+A G GARD+ G  +P+  K GD VL   + G  VK+G +D  + ++ +ILG
Sbjct:    8 PLHGRVIVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BRUME (10 kDa chaperonin OS=Brucella melitensis GN=groS PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  107 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILG 367
            P  +RV+V ++   +KT  GI++P+ +  K   G+V+A G GARD+ G  +P+  K GD VL   + G  VK+G +D  + ++ +ILG
Sbjct:    8 PLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILG 95          
The following BLAST results are available for this feature:
BLAST of DC887700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CH104_RHILO8.198e-1237.1110 kDa chaperonin 4 OS=Rhizobium loti GN=groS4 PE=... [more]
CH105_RHILO1.071e-1137.1110 kDa chaperonin 5 OS=Rhizobium loti GN=groS5 PE=... [more]
CH10_PELUB1.398e-1138.6410 kDa chaperonin OS=Pelagibacter ubique GN=groS P... [more]
CH103_RHILO1.398e-1136.9610 kDa chaperonin 3 OS=Rhizobium loti GN=groS3 PE=... [more]
CH103_BRAJA1.398e-1136.9610 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]
CH10_GEOSL1.826e-1135.8710 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH10_BRUSU1.826e-1137.5010 kDa chaperonin OS=Brucella suis GN=groS PE=2 SV... [more]
CH10_BRUSI1.826e-1137.5010 kDa chaperonin OS=Brucella suis (strain ATCC 23... [more]
CH10_BRUO21.826e-1137.5010 kDa chaperonin OS=Brucella ovis (strain ATCC 25... [more]
CH10_BRUME1.826e-1137.5010 kDa chaperonin OS=Brucella melitensis GN=groS P... [more]

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Properties
Property NameValue
Genbank descriptionDC887700 EIC Citrus sinensis cDNA clone EIC0748 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887700 ID=DC887700; Name=DC887700; organism=Citrus sinensis; type=EST; length=450bp
ACAACATTAAATCAAATTCCTCAGACAATTAGTCTGTTACATTCGTTTTA
AAACAACCATAATTCCAACAATACCCATTCAGCTCAATGTACTAGTCATG
CAGAGTACCCAAAATTTCCTCGTCCCTATACAAATGGTAGTCTTTCTCAC
CGAGCTTGACATGATCGCCACCATAATTCGGTAGAAGAACGGTGTCACCT
TCCTTGAAGGCCACCGGAATGGTATTCCCCTCCTTGTCACGCGCACCCGG
GCCCACAGCAATCACTTTCCCAGAGTTCAGCTTGCTGGACTTTTCAGGGA
GGAGAATCCCGGCATTGGTTTTGGAAGGAGGTACGATTTTCTCGACGAGA
ACACGGTTCAAAGTTGGGATCAATCGCTTCGCCATCGCTTTGCTTTCTCT
GCAAAAATTAGGGCCTTTGGGACAGTGTTGCCACTGAAGAATGACGGGGT
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