DC887700

Overview
NameDC887700
Unique NameDC887700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_METSB (10 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV+V+++    KT  GI++P+ +  K   G++IAVGPG RD  G   P+  K GD VL   + G  VK+  +D  + ++ +ILG +
Sbjct:    5 PLHDRVVVKRLEGEEKTKGGIIIPDTAKEKPQEGEIIAVGPGGRDDSGKLTPLDVKAGDKVLFGKWSGTEVKIDGQDLLIMKESDILGVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_CUPTR (10 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 33/93 (35.48%), Postives = 61/93 (65.59%), Query Frame = -3
Query:   98 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLH 373
            L P  +RV+V+++   +KT +GI++P+ ++ K + G+V+A+GPG +D +GN I +  K GD VL   Y G  VK+  ++  + R+E+I+  ++
Sbjct:    3 LRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVVN 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_CAUCR (10 kDa chaperonin OS=Caulobacter crescentus GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 31/90 (34.44%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RVLV+++   +KT  GI++P+ +  K   G+V+AVGPGAR+ +G+ + +  K GD +L   + G  VK+  +D  + ++ ++LG +
Sbjct:    5 PLGDRVLVKRVEEETKTKGGIIIPDTAKEKPQEGEVVAVGPGARNDKGDVVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLGVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_CAUCN (10 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groS PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 31/90 (34.44%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RVLV+++   +KT  GI++P+ +  K   G+V+AVGPGAR+ +G+ + +  K GD +L   + G  VK+  +D  + ++ ++LG +
Sbjct:    5 PLGDRVLVKRVEEETKTKGGIIIPDTAKEKPQEGEVVAVGPGARNDKGDVVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLGVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH104_RHIME (10 kDa chaperonin 4 OS=Rhizobium meliloti GN=groS4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 29/90 (32.22%), Postives = 54/90 (60.00%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV+V ++    KT  G+++P+ +  K   G+++AVG GARD+ G  +P+  K GD +L   + G  VK+  +D  + ++ +I+G +
Sbjct:    8 PLHDRVVVRRVESEEKTKGGVIIPDTAKEKPQEGEIVAVGSGARDESGKVVPLDVKAGDRILFGKWSGTEVKINGEDLLIMKEADIMGVI 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_RALEH (10 kDa chaperonin OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=groS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 33/93 (35.48%), Postives = 61/93 (65.59%), Query Frame = -3
Query:   98 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLH 373
            L P  +RV+V+++   +KT +GI++P+ ++ K + G+V+A+GPG +D +GN I +  K GD VL   Y G  VK+  ++  + R+E+I+  ++
Sbjct:    3 LRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQAVKVEGQELLVMREEDIMAVVN 95          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_METRJ (10 kDa chaperonin OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=groS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV+V +I    KT  GI++P+ +  K   G+V+AVGPGARD++G    +  K GD VL   + G  VK+  +D  + ++ +I+G +
Sbjct:    5 PLHDRVVVRRIESEEKTKGGIIIPDTAKEKPQEGEVVAVGPGARDEQGRVNALDVKAGDRVLFGKWSGTEVKIDGQDLLIMKESDIMGVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_METI4 (10 kDa chaperonin OS=Methylacidiphilum infernorum (isolate V4) GN=groS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = -3
Query:  101 RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 376
            ++ P   RVLV+ I        GI++P+ +  K     VIAVGPG  D+ G  IP+  K+GD VL+  YGG  VK+  + + + R+++IL  +
Sbjct:    5 KIRPLGERVLVKLIEEQEVRKGGIIIPDTAKEKPQEATVIAVGPGKLDENGKRIPIEVKKGDKVLISKYGGTEVKIDGESFQILREDDILAII 97          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_GEOSM (10 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  101 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 373
            L P  +R++V+++   + T  G+ +PE +  K   G+V+AVG G R  +G   P+  K GD VL   Y G  VKL  +D+ + R+++ILG +
Sbjct:    3 LRPLQDRIIVKRVEEATMTAGGLYIPETAKEKPQQGEVVAVGNGKRGDDGKVYPIDLKVGDKVLFGKYAGSEVKLEGEDFLIMREDDILGVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_GEOMG (10 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = -3
Query:  101 RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 376
            +L P  +R+LV++I     T  GI +P+ +  K   G+++AVG G + ++G  IP+  K GD VL   Y G  +K+  +D+ + R+++ILG +
Sbjct:    2 KLRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIKVEGEDFLIMREDDILGVI 94          
The following BLAST results are available for this feature:
BLAST of DC887700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CH10_METSB4.069e-1136.6710 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH10_CUPTR4.069e-1135.4810 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]
CH10_CAUCR4.069e-1134.4410 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH10_CAUCN4.069e-1134.4410 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH104_RHIME4.069e-1132.2210 kDa chaperonin 4 OS=Rhizobium meliloti GN=groS4... [more]
CH10_RALEH5.314e-1135.4810 kDa chaperonin OS=Ralstonia eutropha (strain AT... [more]
CH10_METRJ5.314e-1136.6710 kDa chaperonin OS=Methylobacterium radiotoleran... [more]
CH10_METI45.314e-1136.5610 kDa chaperonin OS=Methylacidiphilum infernorum ... [more]
CH10_GEOSM5.314e-1135.8710 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH10_GEOMG5.314e-1134.4110 kDa chaperonin OS=Geobacter metallireducens (st... [more]

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Properties
Property NameValue
Genbank descriptionDC887700 EIC Citrus sinensis cDNA clone EIC0748 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887700 ID=DC887700; Name=DC887700; organism=Citrus sinensis; type=EST; length=450bp
ACAACATTAAATCAAATTCCTCAGACAATTAGTCTGTTACATTCGTTTTA
AAACAACCATAATTCCAACAATACCCATTCAGCTCAATGTACTAGTCATG
CAGAGTACCCAAAATTTCCTCGTCCCTATACAAATGGTAGTCTTTCTCAC
CGAGCTTGACATGATCGCCACCATAATTCGGTAGAAGAACGGTGTCACCT
TCCTTGAAGGCCACCGGAATGGTATTCCCCTCCTTGTCACGCGCACCCGG
GCCCACAGCAATCACTTTCCCAGAGTTCAGCTTGCTGGACTTTTCAGGGA
GGAGAATCCCGGCATTGGTTTTGGAAGGAGGTACGATTTTCTCGACGAGA
ACACGGTTCAAAGTTGGGATCAATCGCTTCGCCATCGCTTTGCTTTCTCT
GCAAAAATTAGGGCCTTTGGGACAGTGTTGCCACTGAAGAATGACGGGGT
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