DC887700

Overview
NameDC887700
Unique NameDC887700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH101_RHILO (10 kDa chaperonin 1 OS=Rhizobium loti GN=groS1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 31/90 (34.44%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV++ +    +K+  GI++P+ +  K   G+VIAVGPGARD+ G  +P+  K GD +L   + G  VK+  +D  + ++ +I+G +
Sbjct:    5 PLHDRVVIRRAEGDTKSKGGIIIPDNAKEKPQEGEVIAVGPGARDENGALVPLDVKAGDLILFGKWSGTEVKIDGEDLLIMKEADIMGVI 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_RHOCS (10 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groS PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  101 RLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 376
            R  P  +RV+V+++    KT  GI++P+ +  K   G++IAVG GARD+ G  I +  K GD VL   + G  VK+   +Y + ++ +I+G L
Sbjct:    2 RFRPLHDRVVVKRVESEQKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLIALDVKVGDRVLFGKWSGTEVKIDGVEYLIMKESDIMGVL 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV V+      KT  GILLP+ +  K   G+V+ VGPG R+ +G   PV  K GD VL   Y G  +KLG  DY L  +++IL ++
Sbjct:   13 PLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDILASV 102          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_RALSO (10 kDa chaperonin OS=Ralstonia solanacearum GN=groS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 33/92 (35.87%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  101 LIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 373
            L P  +RV+V+++   +KT +GI++P+ ++ K + G+V+A+GPG +D +GN I +  K GD VL   Y G  VK+  ++  + R+E+I+  +
Sbjct:    3 LRPLHDRVIVKRLDNETKTASGIVIPDAAAEKPDQGEVLAIGPGKKDDKGNPIALDVKVGDRVLFGKYAGQAVKVDGQELLVMREEDIMAVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_METPB (10 kDa chaperonin OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=groS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV+V +I    KT  GI++P+ +  K   G+++AVGPGARD++G    +  K GD VL   + G  VK+  +D  + ++ +I+G +
Sbjct:    5 PLHDRVVVRRIESEEKTKGGIIIPDTAKEKPQEGEIVAVGPGARDEQGRVNALDVKVGDRVLFGKWSGTEVKIDGQDLLIMKESDIMGVV 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_DECAR (10 kDa chaperonin OS=Dechloromonas aromatica (strain RCB) GN=groS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  101 PTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTL 367
            P  +RV+V+++     T +GI++P+ +  K + G+V+AVGPG RD  G  I +  K GD VL   Y G  VK+  ++  + R+E+I+G L
Sbjct:    5 PLHDRVIVKRVEAERTTASGIVIPDSAGEKPDQGEVLAVGPGKRDDNGKQIALDVKVGDRVLFGKYAGQAVKVDGQEVLVMREEDIMGVL 94          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_CAUSK (10 kDa chaperonin OS=Caulobacter sp. (strain K31) GN=groS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  107 PTLNRVLVEKIVPPSKTNAGILLPEK-SSKLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILG 367
            P  +RVLV+++   +KT  GI++P+    K   G+V+AVGPGAR+ +G+ + +  K GD +L   + G  VK+  +D  + ++ ++LG
Sbjct:    5 PLGDRVLVKRVEEETKTKGGIIIPDTVKEKPQEGEVVAVGPGARNDKGDIVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLG 92          
BLAST of DC887700 vs. ExPASy Swiss-Prot
Match: CH10_BIFA0 (10 kDa chaperonin OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=groS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 32/98 (32.65%), Postives = 58/98 (59.18%), Query Frame = -3
Query:   95 MAKRLIPTLNRVLVEKIVPPSKTNAGILLPEKSS-KLNSGKVIAVGPGARDKEGNTIPVAFKEGDTVLLPNYGGDHVKLGEKDYHLYRDEEILGTLHD 385
            M+  L P  ++++V++    ++T +G+++P+ +  K   G+V+AVGPG RD EG  +P+  K GD VL   YGG  V    ++Y +    ++L  ++D
Sbjct:    1 MSFPLTPLEDKIIVKQAEAETQTASGLIIPDNAKEKPQQGEVLAVGPGRRDDEGKRVPMDVKVGDKVLYSKYGGTEVHFKGEEYLIVSARDLLAVVND 98          
The following BLAST results are available for this feature:
BLAST of DC887700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CH101_RHILO5.314e-1134.4410 kDa chaperonin 1 OS=Rhizobium loti GN=groS1 PE=... [more]
CH10_RHOCS6.940e-1136.5610 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH10_SYNY39.064e-1141.1110 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_RALSO9.064e-1135.8710 kDa chaperonin OS=Ralstonia solanacearum GN=gro... [more]
CH10_METPB9.064e-1135.5610 kDa chaperonin OS=Methylobacterium populi (stra... [more]
CH10_DECAR9.064e-1137.7810 kDa chaperonin OS=Dechloromonas aromatica (stra... [more]
CH10_CAUSK9.064e-1135.2310 kDa chaperonin OS=Caulobacter sp. (strain K31) ... [more]
CH10_BIFA09.064e-1132.6510 kDa chaperonin OS=Bifidobacterium animalis subs... [more]

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Properties
Property NameValue
Genbank descriptionDC887700 EIC Citrus sinensis cDNA clone EIC0748 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887700 ID=DC887700; Name=DC887700; organism=Citrus sinensis; type=EST; length=450bp
ACAACATTAAATCAAATTCCTCAGACAATTAGTCTGTTACATTCGTTTTA
AAACAACCATAATTCCAACAATACCCATTCAGCTCAATGTACTAGTCATG
CAGAGTACCCAAAATTTCCTCGTCCCTATACAAATGGTAGTCTTTCTCAC
CGAGCTTGACATGATCGCCACCATAATTCGGTAGAAGAACGGTGTCACCT
TCCTTGAAGGCCACCGGAATGGTATTCCCCTCCTTGTCACGCGCACCCGG
GCCCACAGCAATCACTTTCCCAGAGTTCAGCTTGCTGGACTTTTCAGGGA
GGAGAATCCCGGCATTGGTTTTGGAAGGAGGTACGATTTTCTCGACGAGA
ACACGGTTCAAAGTTGGGATCAATCGCTTCGCCATCGCTTTGCTTTCTCT
GCAAAAATTAGGGCCTTTGGGACAGTGTTGCCACTGAAGAATGACGGGGT
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