CN185134
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_OCHA4 (Tryptophan synthase beta chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=trpB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.091e-37 Identity = 68/132 (51.52%), Postives = 92/132 (69.70%), Query Frame = -1 Query: 256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651 +EA G GLD +H A+++ G GV HG +YLLQ+++GQIL HSV GL+YPGVGPE S+L+D+GR ++ D EA+ A+Q R EGI PALE++HA+A K+ PT+ ++VN SG GDKDV TV Sbjct: 267 VEAGGRGLDGEEHCASMSAGRPGVLHGNRTYLLQNDDGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDDEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDQVMIVNLSGRGDKDVHTV 398 HSP 2 Score: 31.5722 bits (70), Expect = 6.091e-37 Identity = 11/20 (55.00%), Postives = 17/20 (85.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+GLFH F++D V+++GV Sbjct: 248 NAIGLFHPFLDDASVKIVGV 267 HSP 3 Score: 23.8682 bits (50), Expect = 6.091e-37 Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PDV++ VG GS +G Sbjct: 233 GRLPDVIVAAVGGGSNAIG 251
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_NEIGO (Tryptophan synthase beta chain OS=Neisseria gonorrhoeae GN=trpB PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 7.919e-37 Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = -1 Query: 244 LEAAGFGLDSGKHAATLAKGE-VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 651 +EA G +D+ HAA + G +GV HG SYL+QDE GQ+LGTHSV GL+YPG+GPE S L D R E+ A D EA++A+ LCR EGI PALE+SH + +K + ++VN SG GDKD++TV + Sbjct: 260 VEAGGLDVDTPDHAAPITSGAPIGVLHGFRSYLMQDENGQVLGTHSVSAGLDYPGIGPEHSHLHDIKRVEYTVAKDDEALEAFDLLCRFEGIIPALESSHVVGSGDKTRRKMGKDQVILVNLSGRGDKDINTVAKLK 396 HSP 2 Score: 31.5722 bits (70), Expect = 7.919e-37 Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+GLF+ +I +E+VRL+GV Sbjct: 241 NAIGLFYPYIEEENVRLVGV 260 HSP 3 Score: 27.335 bits (59), Expect = 7.919e-37 Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G +PDV + CVG GS +G Sbjct: 226 GRQPDVAVACVGGGSNAIG 244
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STAS1 (Tryptophan synthase beta chain OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trpB PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.000e-36 Identity = 69/135 (51.11%), Postives = 97/135 (71.85%), Query Frame = -1 Query: 247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651 +EAAG G+DS KHA + KG+ GV HG YL+QD++GQI HS+ GL+YPGVGPE S+ D GR ++ TA+D++A+ A R + EGI PA+E++HAL+++E L PT+ N +VV SG GDKD++T+ NY Sbjct: 261 VEAAGDGIDSDKHALAINKGKEGVLHGTKMYLIQDDDGQIQLAHSISAGLDYPGVGPEHSYYHDIGRVKYATASDKQAMDALVRFTKAEGIIPAIESAHALSYVETLAPTMRNDEILVVTVSGRGDKDMETIRNY 395 HSP 2 Score: 25.7942 bits (55), Expect = 1.000e-36 Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD ++ CVG GS +G Sbjct: 228 GQLPDAIVACVGGGSNAIG 246
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_AGRVS (Tryptophan synthase beta chain OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=trpB PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.029e-36 Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = -1 Query: 256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651 +EA G GLD +H A+L G GV HG +YLLQD +GQI HS+ GL+YPG+GPE S+L+D GR E+ D EA++A+Q L R EGI PALE SHALA + K P + +++N G GDKD+ TV Sbjct: 267 VEAGGKGLDGNEHCASLTAGSPGVLHGNRTYLLQDSDGQIKDGHSISAGLDYPGIGPEHSWLKDIGRVEYVPIMDTEALEAFQLLTRTEGIIPALEPSHALAEVMKRAPKMGKDEIILMNLCGRGDKDIFTV 398 HSP 2 Score: 35.4242 bits (80), Expect = 1.029e-36 Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+GLFH F++DE VR+IGV Sbjct: 248 NAIGLFHPFLDDESVRMIGV 267 HSP 3 Score: 23.483 bits (49), Expect = 1.029e-36 Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD+L+ VG GS +G Sbjct: 233 GRLPDMLVAAVGGGSNAIG 251
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STRMU (Tryptophan synthase beta chain OS=Streptococcus mutans GN=trpB PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.337e-36 Identity = 68/131 (51.91%), Postives = 91/131 (69.47%), Query Frame = -1 Query: 256 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 648 EA+G GLD+ KHAAT AKG GV HGA+ +LQDE GQI+ S+ GL+YPGVGPE + + GRA + + TD+EA+++++ L RLEGI PALE+SHA+A +K+ L ++V SG GDKDV V Sbjct: 261 EASGLGLDTDKHAATFAKGRPGVLHGALMDVLQDEHGQIMEAFSISAGLDYPGVGPEHCYFNEIGRATYDSITDEEALESFKLLSRLEGIIPALESSHAIALTQKVAKELGADKSIIVCLSGRGDKDVAQV 391 HSP 2 Score: 29.6462 bits (65), Expect = 1.337e-36 Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = -3 Query: 653 NALGLFHEFINDEDVRLIG 709 NA+GLF+ F+NDE V + G Sbjct: 241 NAIGLFYPFVNDESVAMYG 259 HSP 3 Score: 26.1794 bits (56), Expect = 1.337e-36 Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD +L C+G GS +G Sbjct: 226 GQLPDAVLACIGGGSNAIG 244
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPT (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpB PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.697e-36 Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = -1 Query: 247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651 +EAAG GLD HAA++A G+ GV HG +YLL D +GQI HS+ GL+YPGVGPE S+L D GR F +ATD EA+ A++ CRLEGI PALE SHALA + L P LP +VVN SG GDKD+ +V + Sbjct: 266 VEAAGHGLDK-LHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH 399 HSP 2 Score: 28.4906 bits (62), Expect = 1.697e-36 Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+GLFH F++D V + GV Sbjct: 247 NAMGLFHPFLDDPGVAIYGV 266
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPA (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris GN=trpB PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.697e-36 Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = -1 Query: 247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651 +EAAG GLD HAA++A G+ GV HG +YLL D +GQI HS+ GL+YPGVGPE S+L D GR F +ATD EA+ A++ CRLEGI PALE SHALA + L P LP +VVN SG GDKD+ +V + Sbjct: 266 VEAAGHGLDK-LHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH 399 HSP 2 Score: 28.4906 bits (62), Expect = 1.697e-36 Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+GLFH F++D V + GV Sbjct: 247 NAMGLFHPFLDDPGVAIYGV 266
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_SULSY (Tryptophan synthase beta chain OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=trpB PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 2.210e-36 Identity = 69/134 (51.49%), Postives = 95/134 (70.90%), Query Frame = -1 Query: 250 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 651 +EA G+G+++G HAA++ G +GV HG SY +QDE GQI THS+ GL+YPGVGPE +FL++ RAE+ TATD+EA++ + L R EGI PALE+SHA+ ++ +L VV+N SG GDKDV +V N Sbjct: 259 VEAGGYGIETGMHAASINGGTIGVLHGMKSYFIQDEWGQIESTHSISAGLDYPGVGPEHAFLKEIKRAEYITATDEEALEGFLLLSRTEGIIPALESSHAIIKAVEIAKSLDKSKSVVINLSGRGDKDVQSVKN 392 HSP 2 Score: 27.335 bits (59), Expect = 2.210e-36 Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PDV++ CVG GS +G Sbjct: 225 GKLPDVIVACVGGGSNAIG 243
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_PHEZH (Tryptophan synthase beta chain OS=Phenylobacterium zucineum (strain HLK1) GN=trpB PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.210e-36 Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = -1 Query: 247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651 +EAAG G+++G+HAA + G GV HG M+YLLQD GQI HS+ GL+YPG+GPE ++L D GRA + TATD EA++A++ L LEGI PA+E+SHALA L ++ + VV+N SG GDKDV+TV +Y Sbjct: 267 VEAAGEGVETGRHAAAINGGRPGVLHGNMTYLLQDRVGQIEEAHSISAGLDYPGIGPEHAWLHDVGRATYLTATDTEALEAFRLLSELEGILPAIESSHALARLPEITREVGKDGIVVLNLSGRGDKDVNTVASY 401 HSP 2 Score: 26.5646 bits (57), Expect = 2.210e-36 Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD L+ CVG GS +G Sbjct: 233 GRLPDALVACVGGGSNAIG 251
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_XANCP (Tryptophan synthase beta chain OS=Xanthomonas campestris pv. campestris GN=trpB PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.258e-36 Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = -1 Query: 256 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 648 EAAG G+ SG+HAA++A G GV HG +Y++ D++GQI+ THSV GL+YPGVGPE +FL D+GRA + TD EA+ A+ L EGI ALE+SHA+A KL +P A V+ N SG GDKDV T+ Sbjct: 267 EAAGDGIASGRHAASIAAGRPGVLHGNRTYVICDDDGQIIETHSVSAGLDYPGVGPEHAFLSDSGRAVYQGITDDEALAAFHLLAHTEGILAALESSHAVAQSIKLAREMPKDALVLCNLSGRGDKDVHTI 397 HSP 2 Score: 30.0314 bits (66), Expect = 2.258e-36 Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = -3 Query: 653 NALGLFHEFINDEDVRLIG 709 NA+GLFH F+ND V++ G Sbjct: 247 NAIGLFHAFLNDPGVKIYG 265 HSP 3 Score: 24.6386 bits (52), Expect = 2.258e-36 Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD + CVG GS +G Sbjct: 232 GRLPDAISACVGGGSNAIG 250 The following BLAST results are available for this feature:
BLAST of CN185134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185134 ID=CN185134; Name=CN185134; organism=Citrus sinensis; type=EST; length=756bpback to top |