CN185134

Overview
NameCN185134
Unique NameCN185134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_OCHA4 (Tryptophan synthase beta chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=trpB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.091e-37
Identity = 68/132 (51.52%), Postives = 92/132 (69.70%), Query Frame = -1
Query:  256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651
            +EA G GLD  +H A+++ G  GV HG  +YLLQ+++GQIL  HSV  GL+YPGVGPE S+L+D+GR ++    D EA+ A+Q   R EGI PALE++HA+A   K+ PT+     ++VN SG GDKDV TV
Sbjct:  267 VEAGGRGLDGEEHCASMSAGRPGVLHGNRTYLLQNDDGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDDEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDQVMIVNLSGRGDKDVHTV 398          

HSP 2 Score: 31.5722 bits (70), Expect = 6.091e-37
Identity = 11/20 (55.00%), Postives = 17/20 (85.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+GLFH F++D  V+++GV
Sbjct:  248 NAIGLFHPFLDDASVKIVGV 267          

HSP 3 Score: 23.8682 bits (50), Expect = 6.091e-37
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PDV++  VG GS  +G
Sbjct:  233 GRLPDVIVAAVGGGSNAIG 251          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_NEIGO (Tryptophan synthase beta chain OS=Neisseria gonorrhoeae GN=trpB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.919e-37
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = -1
Query:  244 LEAAGFGLDSGKHAATLAKGE-VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 651
            +EA G  +D+  HAA +  G  +GV HG  SYL+QDE GQ+LGTHSV  GL+YPG+GPE S L D  R E+  A D EA++A+  LCR EGI PALE+SH +   +K    +     ++VN SG GDKD++TV   +
Sbjct:  260 VEAGGLDVDTPDHAAPITSGAPIGVLHGFRSYLMQDENGQVLGTHSVSAGLDYPGIGPEHSHLHDIKRVEYTVAKDDEALEAFDLLCRFEGIIPALESSHVVGSGDKTRRKMGKDQVILVNLSGRGDKDINTVAKLK 396          

HSP 2 Score: 31.5722 bits (70), Expect = 7.919e-37
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+GLF+ +I +E+VRL+GV
Sbjct:  241 NAIGLFYPYIEEENVRLVGV 260          

HSP 3 Score: 27.335 bits (59), Expect = 7.919e-37
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G +PDV + CVG GS  +G
Sbjct:  226 GRQPDVAVACVGGGSNAIG 244          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STAS1 (Tryptophan synthase beta chain OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.000e-36
Identity = 69/135 (51.11%), Postives = 97/135 (71.85%), Query Frame = -1
Query:  247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651
            +EAAG G+DS KHA  + KG+ GV HG   YL+QD++GQI   HS+  GL+YPGVGPE S+  D GR ++ TA+D++A+ A  R  + EGI PA+E++HAL+++E L PT+ N   +VV  SG GDKD++T+ NY
Sbjct:  261 VEAAGDGIDSDKHALAINKGKEGVLHGTKMYLIQDDDGQIQLAHSISAGLDYPGVGPEHSYYHDIGRVKYATASDKQAMDALVRFTKAEGIIPAIESAHALSYVETLAPTMRNDEILVVTVSGRGDKDMETIRNY 395          

HSP 2 Score: 25.7942 bits (55), Expect = 1.000e-36
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD ++ CVG GS  +G
Sbjct:  228 GQLPDAIVACVGGGSNAIG 246          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_AGRVS (Tryptophan synthase beta chain OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=trpB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.029e-36
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = -1
Query:  256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651
            +EA G GLD  +H A+L  G  GV HG  +YLLQD +GQI   HS+  GL+YPG+GPE S+L+D GR E+    D EA++A+Q L R EGI PALE SHALA + K  P +     +++N  G GDKD+ TV
Sbjct:  267 VEAGGKGLDGNEHCASLTAGSPGVLHGNRTYLLQDSDGQIKDGHSISAGLDYPGIGPEHSWLKDIGRVEYVPIMDTEALEAFQLLTRTEGIIPALEPSHALAEVMKRAPKMGKDEIILMNLCGRGDKDIFTV 398          

HSP 2 Score: 35.4242 bits (80), Expect = 1.029e-36
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+GLFH F++DE VR+IGV
Sbjct:  248 NAIGLFHPFLDDESVRMIGV 267          

HSP 3 Score: 23.483 bits (49), Expect = 1.029e-36
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD+L+  VG GS  +G
Sbjct:  233 GRLPDMLVAAVGGGSNAIG 251          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STRMU (Tryptophan synthase beta chain OS=Streptococcus mutans GN=trpB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.337e-36
Identity = 68/131 (51.91%), Postives = 91/131 (69.47%), Query Frame = -1
Query:  256 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 648
            EA+G GLD+ KHAAT AKG  GV HGA+  +LQDE GQI+   S+  GL+YPGVGPE  +  + GRA + + TD+EA+++++ L RLEGI PALE+SHA+A  +K+   L     ++V  SG GDKDV  V
Sbjct:  261 EASGLGLDTDKHAATFAKGRPGVLHGALMDVLQDEHGQIMEAFSISAGLDYPGVGPEHCYFNEIGRATYDSITDEEALESFKLLSRLEGIIPALESSHAIALTQKVAKELGADKSIIVCLSGRGDKDVAQV 391          

HSP 2 Score: 29.6462 bits (65), Expect = 1.337e-36
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = -3
Query:  653 NALGLFHEFINDEDVRLIG 709
            NA+GLF+ F+NDE V + G
Sbjct:  241 NAIGLFYPFVNDESVAMYG 259          

HSP 3 Score: 26.1794 bits (56), Expect = 1.337e-36
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD +L C+G GS  +G
Sbjct:  226 GQLPDAVLACIGGGSNAIG 244          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPT (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.697e-36
Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = -1
Query:  247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651
            +EAAG GLD   HAA++A G+ GV HG  +YLL D +GQI   HS+  GL+YPGVGPE S+L D GR  F +ATD EA+ A++  CRLEGI PALE SHALA +  L P LP    +VVN SG GDKD+ +V  +
Sbjct:  266 VEAAGHGLDK-LHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH 399          

HSP 2 Score: 28.4906 bits (62), Expect = 1.697e-36
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+GLFH F++D  V + GV
Sbjct:  247 NAMGLFHPFLDDPGVAIYGV 266          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPA (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris GN=trpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.697e-36
Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = -1
Query:  247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651
            +EAAG GLD   HAA++A G+ GV HG  +YLL D +GQI   HS+  GL+YPGVGPE S+L D GR  F +ATD EA+ A++  CRLEGI PALE SHALA +  L P LP    +VVN SG GDKD+ +V  +
Sbjct:  266 VEAAGHGLDK-LHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH 399          

HSP 2 Score: 28.4906 bits (62), Expect = 1.697e-36
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+GLFH F++D  V + GV
Sbjct:  247 NAMGLFHPFLDDPGVAIYGV 266          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_SULSY (Tryptophan synthase beta chain OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=trpB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.210e-36
Identity = 69/134 (51.49%), Postives = 95/134 (70.90%), Query Frame = -1
Query:  250 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 651
            +EA G+G+++G HAA++  G +GV HG  SY +QDE GQI  THS+  GL+YPGVGPE +FL++  RAE+ TATD+EA++ +  L R EGI PALE+SHA+    ++  +L     VV+N SG GDKDV +V N
Sbjct:  259 VEAGGYGIETGMHAASINGGTIGVLHGMKSYFIQDEWGQIESTHSISAGLDYPGVGPEHAFLKEIKRAEYITATDEEALEGFLLLSRTEGIIPALESSHAIIKAVEIAKSLDKSKSVVINLSGRGDKDVQSVKN 392          

HSP 2 Score: 27.335 bits (59), Expect = 2.210e-36
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PDV++ CVG GS  +G
Sbjct:  225 GKLPDVIVACVGGGSNAIG 243          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_PHEZH (Tryptophan synthase beta chain OS=Phenylobacterium zucineum (strain HLK1) GN=trpB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.210e-36
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = -1
Query:  247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651
            +EAAG G+++G+HAA +  G  GV HG M+YLLQD  GQI   HS+  GL+YPG+GPE ++L D GRA + TATD EA++A++ L  LEGI PA+E+SHALA L ++   +     VV+N SG GDKDV+TV +Y
Sbjct:  267 VEAAGEGVETGRHAAAINGGRPGVLHGNMTYLLQDRVGQIEEAHSISAGLDYPGIGPEHAWLHDVGRATYLTATDTEALEAFRLLSELEGILPAIESSHALARLPEITREVGKDGIVVLNLSGRGDKDVNTVASY 401          

HSP 2 Score: 26.5646 bits (57), Expect = 2.210e-36
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD L+ CVG GS  +G
Sbjct:  233 GRLPDALVACVGGGSNAIG 251          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_XANCP (Tryptophan synthase beta chain OS=Xanthomonas campestris pv. campestris GN=trpB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.258e-36
Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = -1
Query:  256 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 648
            EAAG G+ SG+HAA++A G  GV HG  +Y++ D++GQI+ THSV  GL+YPGVGPE +FL D+GRA +   TD EA+ A+  L   EGI  ALE+SHA+A   KL   +P  A V+ N SG GDKDV T+
Sbjct:  267 EAAGDGIASGRHAASIAAGRPGVLHGNRTYVICDDDGQIIETHSVSAGLDYPGVGPEHAFLSDSGRAVYQGITDDEALAAFHLLAHTEGILAALESSHAVAQSIKLAREMPKDALVLCNLSGRGDKDVHTI 397          

HSP 2 Score: 30.0314 bits (66), Expect = 2.258e-36
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = -3
Query:  653 NALGLFHEFINDEDVRLIG 709
            NA+GLFH F+ND  V++ G
Sbjct:  247 NAIGLFHAFLNDPGVKIYG 265          

HSP 3 Score: 24.6386 bits (52), Expect = 2.258e-36
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD +  CVG GS  +G
Sbjct:  232 GRLPDAISACVGGGSNAIG 250          
The following BLAST results are available for this feature:
BLAST of CN185134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_OCHA46.091e-3751.52Tryptophan synthase beta chain OS=Ochrobactrum ant... [more]
TRPB_NEIGO7.919e-3748.91Tryptophan synthase beta chain OS=Neisseria gonorr... [more]
TRPB_STAS11.000e-3651.11Tryptophan synthase beta chain OS=Staphylococcus s... [more]
TRPB_AGRVS1.029e-3650.76Tryptophan synthase beta chain OS=Agrobacterium vi... [more]
TRPB_STRMU1.337e-3651.91Tryptophan synthase beta chain OS=Streptococcus mu... [more]
TRPB_RHOPT1.697e-3655.56Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_RHOPA1.697e-3655.56Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_SULSY2.210e-3651.49Tryptophan synthase beta chain OS=Sulfurihydrogeni... [more]
TRPB_PHEZH2.210e-3653.33Tryptophan synthase beta chain OS=Phenylobacterium... [more]
TRPB_XANCP2.258e-3653.44Tryptophan synthase beta chain OS=Xanthomonas camp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006N01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185134 ID=CN185134; Name=CN185134; organism=Citrus sinensis; type=EST; length=756bp
GCTTATAGATTGTACTTCCTATCAAAACAAATATCAACGAGTACAATAGT
TGCTTTGGCGATTGTGGCTCGGATTGGATCGAAAAACTTAGACATTAAAT
TAAAATATGCACAAAAGGGAGAAAAATAGGTCTTAAATTAATAGATTTCT
CGGGTTGCTGCTAAATTGACGGGAACCCTTAAATATTGTGGTCACCACTT
CTTCGATCCATTACAATTTCTACGTCGATAATTATTGATTGTATCTGTAA
TTGACGACCGTGTCGACGTCCTTATCCCCACCTCCACTACAGTTGACAAC
AACTTTTGCACCATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTA
ATGCATGAGATGCCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGC
CGTTGATATGCTTGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGC
ACGCCCAGTGTCCCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACT
CTAGCCCTACACCGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCT
TGCAACAAGTAGCTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGC
CAGAGTTGCAGCGTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCA
ACTCCAATCAATCTCACATCTTCATCATTTATGAATTCATGAAACAAACC
CAACGCATTTTGATCCACTGCCCACACAAAGCAGCAATACATCAGGCTTG
CCTCCC
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