CN185134
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BACTN (Tryptophan synthase beta chain OS=Bacteroides thetaiotaomicron GN=trpB PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 7.829e-26 Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = -1 Query: 247 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 648 EA G G+++G AAT+ G++G+ HGA +Y++Q+E+GQI +S+ GL+YPG+GP + L RA D EA++A L +LEGI PALE++HAL L+KL VV+ SG GDKD++T +++ Sbjct: 260 EAGGKGIETGMTAATIQLGKMGIIHGARTYVIQNEDGQIEEPYSISAGLDYPGIGPIHANLAAQRRATVLAVNDDEAIEAAYELTKLEGIIPALESAHALGALKKL--KFKPEDVVVLTVSGRGDKDIETYLSF 391 HSP 2 Score: 25.0238 bits (53), Expect = 7.829e-26 Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = -2 Query: 693 PDVLLLCVGSGSKCVGFV 746 PD L+ CVG GS G + Sbjct: 228 PDYLIACVGGGSNAAGTI 245
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_HALSA (Tryptophan synthase beta chain OS=Halobacterium salinarium GN=trpB PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.283e-25 Identity = 69/143 (48.25%), Postives = 89/143 (62.24%), Query Frame = -1 Query: 253 D*LELEAAGFGL----DSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 663 D L +EA G L D+G ++A+L+ G GV HGA + LLQ E GQI+ +HSV GL+Y GVGPE++ L DTGR D A+ A+ RL R EG+ PALE SHA+A L++ VVVN SG GDKD+DTV+ Sbjct: 273 DLLAVEAGGSRLGVDDDAGYAPNSASLSTGTEGVLHGARTKLLQTETGQIVESHSVSAGLDYAGVGPELAHLVDTGRITPTNVDDDAALAAFHRLSRDEGVIPALETSHAVAALDQ----YDGDGPVVVNVSGRGDKDLDTVI 411
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_HALS3 (Tryptophan synthase beta chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=trpB PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.283e-25 Identity = 69/143 (48.25%), Postives = 89/143 (62.24%), Query Frame = -1 Query: 253 D*LELEAAGFGL----DSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 663 D L +EA G L D+G ++A+L+ G GV HGA + LLQ E GQI+ +HSV GL+Y GVGPE++ L DTGR D A+ A+ RL R EG+ PALE SHA+A L++ VVVN SG GDKD+DTV+ Sbjct: 273 DLLAVEAGGSRLGVDDDAGYAPNSASLSTGTEGVLHGARTKLLQTETGQIVESHSVSAGLDYAGVGPELAHLVDTGRITPTNVDDDAALAAFHRLSRDEGVIPALETSHAVAALDQ----YDGDGPVVVNVSGRGDKDLDTVI 411
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_AZOPC (Tryptophan synthase beta chain OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=trpB PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.388e-25 Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = -1 Query: 259 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 648 EAAG G+ SG AAT+ G++G+ HG+ + ++Q +GQI +S+ GL+YPG+GP + + GR+E D EA+ A L RLEGI PALE++HAL +K +VV SG GDKD++T Sbjct: 266 EAAGQGIHSGHSAATIHLGKIGIIHGSKTLIMQTSDGQIEEPYSISAGLDYPGIGPMHAHIAKQGRSEILAIDDNEALSAAMELTRLEGIIPALESAHALGIFQK--KQFKTNDVIVVCLSGRGDKDMET 393 HSP 2 Score: 24.6386 bits (52), Expect = 8.388e-25 Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = -2 Query: 693 PDVLLLCVGSGSKCVGFV 746 PD L+ C+G GS G + Sbjct: 234 PDYLIACIGGGSNAAGTI 251
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BACV8 (Tryptophan synthase beta chain OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=trpB PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.849e-24 Identity = 58/130 (44.62%), Postives = 83/130 (63.85%), Query Frame = -1 Query: 259 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 648 EA G G+D+G AAT+ G++G+ HGA + ++Q+E+GQI +S+ GL+YPG+GP + L RA D EA++A L RLEGI PALE++HAL L+K+ VV+ SG GDKD++T Sbjct: 260 EAGGKGIDTGFSAATIQLGKMGIIHGAKTLVIQNEDGQIEEPYSISAGLDYPGIGPMHANLAKQQRALVLAINDDEAIRAAFELTRLEGIIPALESAHALGALDKM--RFKPTDIVVLTVSGRGDKDIET 387 HSP 2 Score: 25.0238 bits (53), Expect = 1.849e-24 Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = -2 Query: 693 PDVLLLCVGSGSKCVGFV 746 PD L+ CVG GS G + Sbjct: 228 PDYLMACVGGGSNAAGTI 245
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRP (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=trpB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.786e-20 Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = -1 Query: 391 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 651 +E AG G+++GKH A L G G+Y G S+L+Q +EGQI + SV GL++P VGPE S+L RA++ + TD EA++A+Q L + Sbjct: 138 VEPAGKGIETGKHGAPLTHGRTGIYFGMKSHLMQSQEGQIEKSWSVSAGLDFPSVGPEHSWLNSINRAKYVSVTDIEALEAFQILSK 224 HSP 2 Score: 26.5646 bits (57), Expect = 4.786e-20 Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 690 PDVLLLCVGSGSKCVGFVS 746 PD ++ CVG GS +G S Sbjct: 108 PDAIIACVGGGSNAIGIFS 126 HSP 3 Score: 26.5646 bits (57), Expect = 4.786e-20 Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+G+F +FI DE V LIGV Sbjct: 120 NAIGIFSDFI-DEKVNLIGV 138
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRM (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=trpB PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.940e-17 Identity = 39/91 (42.86%), Postives = 61/91 (67.03%), Query Frame = -1 Query: 391 D*LELEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 663 D + +E AG G+++GKH A L G G+Y G S L+Q++EGQI + S+ GL++P VGPE ++L RA++ + TD EA++A+Q L + Sbjct: 134 DLIGVEPAGRGIETGKHGAPLNHGRTGIYFGMKSSLMQNQEGQIEKSWSISAGLDFPSVGPEHAWLHSINRAQYVSITDIEALEAFQILSK 224 HSP 2 Score: 26.5646 bits (57), Expect = 2.940e-17 Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 690 PDVLLLCVGSGSKCVGFVS 746 PD ++ CVG GS +G S Sbjct: 108 PDAIIACVGGGSNAIGIFS 126 The following BLAST results are available for this feature:
BLAST of CN185134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185134 ID=CN185134; Name=CN185134; organism=Citrus sinensis; type=EST; length=756bpback to top |