CN185134

Overview
NameCN185134
Unique NameCN185134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BACTN (Tryptophan synthase beta chain OS=Bacteroides thetaiotaomicron GN=trpB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.829e-26
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = -1
Query:  247 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 648
            EA G G+++G  AAT+  G++G+ HGA +Y++Q+E+GQI   +S+  GL+YPG+GP  + L    RA      D EA++A   L +LEGI PALE++HAL  L+KL         VV+  SG GDKD++T +++
Sbjct:  260 EAGGKGIETGMTAATIQLGKMGIIHGARTYVIQNEDGQIEEPYSISAGLDYPGIGPIHANLAAQRRATVLAVNDDEAIEAAYELTKLEGIIPALESAHALGALKKL--KFKPEDVVVLTVSGRGDKDIETYLSF 391          

HSP 2 Score: 25.0238 bits (53), Expect = 7.829e-26
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = -2
Query:  693 PDVLLLCVGSGSKCVGFV 746
            PD L+ CVG GS   G +
Sbjct:  228 PDYLIACVGGGSNAAGTI 245          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_HALSA (Tryptophan synthase beta chain OS=Halobacterium salinarium GN=trpB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.283e-25
Identity = 69/143 (48.25%), Postives = 89/143 (62.24%), Query Frame = -1
Query:  253 D*LELEAAGFGL----DSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 663
            D L +EA G  L    D+G   ++A+L+ G  GV HGA + LLQ E GQI+ +HSV  GL+Y GVGPE++ L DTGR       D  A+ A+ RL R EG+ PALE SHA+A L++          VVVN SG GDKD+DTV+
Sbjct:  273 DLLAVEAGGSRLGVDDDAGYAPNSASLSTGTEGVLHGARTKLLQTETGQIVESHSVSAGLDYAGVGPELAHLVDTGRITPTNVDDDAALAAFHRLSRDEGVIPALETSHAVAALDQ----YDGDGPVVVNVSGRGDKDLDTVI 411          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_HALS3 (Tryptophan synthase beta chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=trpB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.283e-25
Identity = 69/143 (48.25%), Postives = 89/143 (62.24%), Query Frame = -1
Query:  253 D*LELEAAGFGL----DSG--KHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 663
            D L +EA G  L    D+G   ++A+L+ G  GV HGA + LLQ E GQI+ +HSV  GL+Y GVGPE++ L DTGR       D  A+ A+ RL R EG+ PALE SHA+A L++          VVVN SG GDKD+DTV+
Sbjct:  273 DLLAVEAGGSRLGVDDDAGYAPNSASLSTGTEGVLHGARTKLLQTETGQIVESHSVSAGLDYAGVGPELAHLVDTGRITPTNVDDDAALAAFHRLSRDEGVIPALETSHAVAALDQ----YDGDGPVVVNVSGRGDKDLDTVI 411          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_AZOPC (Tryptophan synthase beta chain OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=trpB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.388e-25
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = -1
Query:  259 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 648
            EAAG G+ SG  AAT+  G++G+ HG+ + ++Q  +GQI   +S+  GL+YPG+GP  + +   GR+E     D EA+ A   L RLEGI PALE++HAL   +K          +VV  SG GDKD++T
Sbjct:  266 EAAGQGIHSGHSAATIHLGKIGIIHGSKTLIMQTSDGQIEEPYSISAGLDYPGIGPMHAHIAKQGRSEILAIDDNEALSAAMELTRLEGIIPALESAHALGIFQK--KQFKTNDVIVVCLSGRGDKDMET 393          

HSP 2 Score: 24.6386 bits (52), Expect = 8.388e-25
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = -2
Query:  693 PDVLLLCVGSGSKCVGFV 746
            PD L+ C+G GS   G +
Sbjct:  234 PDYLIACIGGGSNAAGTI 251          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BACV8 (Tryptophan synthase beta chain OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.849e-24
Identity = 58/130 (44.62%), Postives = 83/130 (63.85%), Query Frame = -1
Query:  259 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDT 648
            EA G G+D+G  AAT+  G++G+ HGA + ++Q+E+GQI   +S+  GL+YPG+GP  + L    RA      D EA++A   L RLEGI PALE++HAL  L+K+         VV+  SG GDKD++T
Sbjct:  260 EAGGKGIDTGFSAATIQLGKMGIIHGAKTLVIQNEDGQIEEPYSISAGLDYPGIGPMHANLAKQQRALVLAINDDEAIRAAFELTRLEGIIPALESAHALGALDKM--RFKPTDIVVLTVSGRGDKDIET 387          

HSP 2 Score: 25.0238 bits (53), Expect = 1.849e-24
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = -2
Query:  693 PDVLLLCVGSGSKCVGFV 746
            PD L+ CVG GS   G +
Sbjct:  228 PDYLMACVGGGSNAAGTI 245          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRP (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum padi GN=trpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.786e-20
Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  391 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 651
            +E AG G+++GKH A L  G  G+Y G  S+L+Q +EGQI  + SV  GL++P VGPE S+L    RA++ + TD EA++A+Q L +
Sbjct:  138 VEPAGKGIETGKHGAPLTHGRTGIYFGMKSHLMQSQEGQIEKSWSVSAGLDFPSVGPEHSWLNSINRAKYVSVTDIEALEAFQILSK 224          

HSP 2 Score: 26.5646 bits (57), Expect = 4.786e-20
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  690 PDVLLLCVGSGSKCVGFVS 746
            PD ++ CVG GS  +G  S
Sbjct:  108 PDAIIACVGGGSNAIGIFS 126          

HSP 3 Score: 26.5646 bits (57), Expect = 4.786e-20
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+G+F +FI DE V LIGV
Sbjct:  120 NAIGIFSDFI-DEKVNLIGV 138          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BUCRM (Tryptophan synthase beta chain (Fragment) OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=trpB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.940e-17
Identity = 39/91 (42.86%), Postives = 61/91 (67.03%), Query Frame = -1
Query:  391 D*LELEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCR 663
            D + +E AG G+++GKH A L  G  G+Y G  S L+Q++EGQI  + S+  GL++P VGPE ++L    RA++ + TD EA++A+Q L +
Sbjct:  134 DLIGVEPAGRGIETGKHGAPLNHGRTGIYFGMKSSLMQNQEGQIEKSWSISAGLDFPSVGPEHAWLHSINRAQYVSITDIEALEAFQILSK 224          

HSP 2 Score: 26.5646 bits (57), Expect = 2.940e-17
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  690 PDVLLLCVGSGSKCVGFVS 746
            PD ++ CVG GS  +G  S
Sbjct:  108 PDAIIACVGGGSNAIGIFS 126          
The following BLAST results are available for this feature:
BLAST of CN185134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_BACTN7.829e-2643.28Tryptophan synthase beta chain OS=Bacteroides thet... [more]
TRPB_HALSA5.283e-2548.25Tryptophan synthase beta chain OS=Halobacterium sa... [more]
TRPB_HALS35.283e-2548.25Tryptophan synthase beta chain OS=Halobacterium sa... [more]
TRPB_AZOPC8.388e-2543.08Tryptophan synthase beta chain OS=Azobacteroides p... [more]
TRPB_BACV81.849e-2444.62Tryptophan synthase beta chain OS=Bacteroides vulg... [more]
TRPB_BUCRP4.786e-2045.98Tryptophan synthase beta chain (Fragment) OS=Buchn... [more]
TRPB_BUCRM2.940e-1742.86Tryptophan synthase beta chain (Fragment) OS=Buchn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006N01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185134 ID=CN185134; Name=CN185134; organism=Citrus sinensis; type=EST; length=756bp
GCTTATAGATTGTACTTCCTATCAAAACAAATATCAACGAGTACAATAGT
TGCTTTGGCGATTGTGGCTCGGATTGGATCGAAAAACTTAGACATTAAAT
TAAAATATGCACAAAAGGGAGAAAAATAGGTCTTAAATTAATAGATTTCT
CGGGTTGCTGCTAAATTGACGGGAACCCTTAAATATTGTGGTCACCACTT
CTTCGATCCATTACAATTTCTACGTCGATAATTATTGATTGTATCTGTAA
TTGACGACCGTGTCGACGTCCTTATCCCCACCTCCACTACAGTTGACAAC
AACTTTTGCACCATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTA
ATGCATGAGATGCCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGC
CGTTGATATGCTTGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGC
ACGCCCAGTGTCCCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACT
CTAGCCCTACACCGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCT
TGCAACAAGTAGCTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGC
CAGAGTTGCAGCGTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCA
ACTCCAATCAATCTCACATCTTCATCATTTATGAATTCATGAAACAAACC
CAACGCATTTTGATCCACTGCCCACACAAAGCAGCAATACATCAGGCTTG
CCTCCC
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