CN185134

Overview
NameCN185134
Unique NameCN185134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_CLOB8 (Tryptophan synthase beta chain OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=trpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.182e-39
Identity = 70/136 (51.47%), Postives = 102/136 (75.00%), Query Frame = -1
Query:  247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ-AYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651
            +EAAG G+++G+HAAT+ K E G+ HG +SY+LQD +G +L  +S+  GL+YPGVGPE ++L +T RAE+ + TD+EAV+  +  L R+EGI PALE+SHA+A+ +KL  TL +   ++VN SG GDKD+D V+ Y
Sbjct:  252 VEAAGKGIETGEHAATITKKEKGILHGMLSYVLQDNDGGVLEAYSISAGLDYPGVGPEHAYLAETNRAEYESITDEEAVRDGFMYLTRIEGIVPALESSHAVAYAKKLAQTLSSDKIIIVNISGRGDKDMDAVLAY 387          

HSP 2 Score: 32.7278 bits (73), Expect = 4.182e-39
Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+G+F+ FI+DE+V LIGV
Sbjct:  233 NAIGIFYPFIHDEEVNLIGV 252          

HSP 3 Score: 21.9422 bits (45), Expect = 4.182e-39
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD +L  VG GS  +G
Sbjct:  218 GRLPDYILAPVGGGSNAIG 236          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STRMK (Tryptophan synthase beta chain OS=Stenotrophomonas maltophilia (strain K279a) GN=trpB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.431e-39
Identity = 73/131 (55.73%), Postives = 93/131 (70.99%), Query Frame = -1
Query:  256 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 648
            EAAG G+++G+HAA++A G  GV HG  +Y+L D++GQI+ THSV  GL+YPGVGPE +FL DTGRA +   TD+EA+QA+  L   EGI PALE+SHALA   KL    P    V+ N SG GDKDV T+
Sbjct:  267 EAAGDGINTGRHAASIAAGRPGVLHGNRTYVLCDDDGQIIETHSVSAGLDYPGVGPEHAFLADTGRARYLGITDEEALQAFHLLAHTEGILPALESSHALAQAIKLARERPRDQIVLCNLSGRGDKDVHTI 397          

HSP 2 Score: 31.5722 bits (70), Expect = 5.431e-39
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = -3
Query:  653 NALGLFHEFINDEDVRLIG 709
            NA+GLFH F+ND  V ++G
Sbjct:  247 NAIGLFHAFLNDRQVEIVG 265          

HSP 3 Score: 25.0238 bits (53), Expect = 5.431e-39
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD +  CVG GS  +G
Sbjct:  232 GRLPDAITACVGGGSNAIG 250          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BORPE (Tryptophan synthase beta chain OS=Bordetella pertussis GN=trpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.433e-39
Identity = 69/132 (52.27%), Postives = 99/132 (75.00%), Query Frame = -1
Query:  256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651
            +EAAG G+++G+HAA+LA G++GV HG  +Y++Q+ +GQ+  THSV  GL+YPGVGPE ++L+D+GRAE+   TD EA+ A+   CR+EGI PALE++HA+A   K+ P L     ++VN SG GDKD+ TV
Sbjct:  260 VEAAGEGMETGRHAASLAAGQIGVLHGNRTYVMQNADGQVQETHSVSAGLDYPGVGPEHAWLKDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVKMTPALSKDKVILVNLSGRGDKDMHTV 391          

HSP 2 Score: 30.8018 bits (68), Expect = 5.433e-39
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+G+FH +I  E+VRLIGV
Sbjct:  241 NAMGIFHPYIPYENVRLIGV 260          

HSP 3 Score: 21.9422 bits (45), Expect = 5.433e-39
Identity = 8/19 (42.11%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G +PD ++  VG GS  +G
Sbjct:  226 GRQPDYVVAAVGGGSNAMG 244          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.573e-39
Identity = 77/148 (52.03%), Postives = 107/148 (72.30%), Query Frame = -1
Query:  250 FMNS*MMKM*D*LELEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 693
            F+N   +K+   + +E AG GL++ KH ATL KG VG+ HG  +YLLQD+EGQI  +HS+  GL+YPGVGPE S+L+++GRA + +A+D EA++A++ LC+ EGI PALE+SHALA+  KL       + +VVN SG GDKD+ TV N
Sbjct:  242 FLNDKEVKL---IGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESIIVVNLSGRGDKDLSTVYN 386          

HSP 2 Score: 25.7942 bits (55), Expect = 6.573e-39
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  690 PDVLLLCVGSGSKCVGFVS 746
            PD ++ CVG GS  +G  S
Sbjct:  222 PDYVIACVGGGSNAIGIFS 240          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRFU (Tryptophan synthase beta chain 1 OS=Pyrococcus furiosus GN=trpB1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 6.574e-39
Identity = 77/152 (50.66%), Postives = 107/152 (70.39%), Query Frame = -1
Query:  238 FMNS*MMKM*D*LELEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 693
            F+N   +K+   + +EA G GL+SGKH+A+L  G+VGV+HG +SY LQDEEGQI  THS+  GL+YPGVGPE ++L+   RAE+ T TD+EA++A+  L R EGI PALE++HA+A+  KL   +     ++VN SG GDKD+D V+    N
Sbjct:  239 FVNDKKVKL---VGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSGN 387          

HSP 2 Score: 26.5646 bits (57), Expect = 6.574e-39
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PDV++ CVG GS  +G
Sbjct:  216 GQLPDVIVACVGGGSNAMG 234          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_METJA (Tryptophan synthase beta chain OS=Methanocaldococcus jannaschii GN=trpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.062e-39
Identity = 74/132 (56.06%), Postives = 95/132 (71.97%), Query Frame = -1
Query:  256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651
            +EA G G+++G H A+L  GEVGV HGA  Y+ +DE GQI  ++S+  GL+YPGVGPE+SFL+D GR +    TD EA++A+Q LCRLEGI PALE+SHALA+  KL   L     +V+N SG GDKDV TV
Sbjct:  265 VEAGGKGIETGMHGASLCAGEVGVLHGAKIYVKEDEFGQIEESYSISAGLDYPGVGPELSFLKDEGRIKAVCVTDDEALEAFQLLCRLEGILPALESSHALAYAVKLADKLDKDDIMVINLSGRGDKDVQTV 396          

HSP 2 Score: 27.335 bits (59), Expect = 7.062e-39
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PDV++ CVG GS  +G
Sbjct:  232 GRLPDVIVACVGGGSNAIG 250          

HSP 3 Score: 24.2534 bits (51), Expect = 7.062e-39
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA+G F+EF+ D+DV L  V
Sbjct:  247 NAIGAFYEFL-DDDVELYAV 265          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJD (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=trpB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.564e-39
Identity = 70/136 (51.47%), Postives = 98/136 (72.06%), Query Frame = -1
Query:  244 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 651
            +EA G G+D+  HAATL KGE G+ HG  + +LQD+ G IL  HSV  GL+YPG+GP  +FL ++ RA+++  +D+E +QA + LC+ EGI  A+E+SHALAFLEKLCPTL   + +V+N SG GDKD+  +  Y+
Sbjct:  251 IEAGGLGVDTLYHAATLNKGETGIIHGMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVINLSGRGDKDMQMIREYK 386          

HSP 2 Score: 32.3426 bits (72), Expect = 8.564e-39
Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = -3
Query:  650 NALGLFHEFINDEDVRLIGV 709
            NA G+F++FI DE+V+LIG+
Sbjct:  232 NAAGIFYDFIKDENVKLIGI 251          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STRGG (Tryptophan synthase beta chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.166e-39
Identity = 69/134 (51.49%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  247 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 648
            E AG G+++G+HAATL  GE G+ HG+ SY+LQD+EGQI   +S+  GL+YPG+GPE S+L+D GR E+   TD  A+QA + L R EGI PA+E++HALA    L   L     ++VN SG GDKD+DT   Y
Sbjct:  269 EPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHSYLKDVGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALDLGKELGKDGLILVNLSGRGDKDMDTAARY 402          

HSP 2 Score: 33.4982 bits (75), Expect = 9.166e-39
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = -3
Query:  653 NALGLFHEFINDEDVRLIG 709
            NA+GLFH FI DE VRL+G
Sbjct:  249 NAIGLFHAFIPDEGVRLVG 267          

HSP 3 Score: 24.6386 bits (52), Expect = 9.166e-39
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD  + CVG GS  +G
Sbjct:  234 GRLPDAAVACVGGGSNAIG 252          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STRCO (Tryptophan synthase beta chain OS=Streptomyces coelicolor GN=trpB PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 9.166e-39
Identity = 68/134 (50.75%), Postives = 94/134 (70.15%), Query Frame = -1
Query:  247 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 648
            E AG G+++G+HAATL  GE G+ HG+ SY+LQD+EGQI   +S+  GL+YPG+GPE ++L+D+GR E+   TD  A+QA + L R EGI PA+E++HALA   ++   L     +VVN SG GDKD+DT   Y
Sbjct:  269 EPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALEVGRELGRDGLLVVNLSGRGDKDMDTAARY 402          

HSP 2 Score: 34.2686 bits (77), Expect = 9.166e-39
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = -3
Query:  653 NALGLFHEFINDEDVRLIG 709
            NA+GLFH FI D DVRLIG
Sbjct:  249 NAIGLFHAFIPDADVRLIG 267          

HSP 3 Score: 25.0238 bits (53), Expect = 9.166e-39
Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            G  PD  + CVG GS  +G
Sbjct:  234 GRLPDAAIACVGGGSNAIG 252          
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB1_ARCFU (Tryptophan synthase beta chain 1 OS=Archaeoglobus fulgidus GN=trpB1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.116e-38
Identity = 70/132 (53.03%), Postives = 98/132 (74.24%), Query Frame = -1
Query:  256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651
            +EA G G++SG+H+A+L  G  GV HG +SY LQDEEG +L THSV  GL+YPGVGPE ++L++TGR E+ T  D+EA++A++ L +LEGI PALE++HA+A+  K+   +     +VVN SG GDKD+D V
Sbjct:  261 VEAGGEGIESGRHSASLTAGSKGVLHGMLSYFLQDEEGMMLDTHSVSAGLDYPGVGPEHAYLKETGRCEYVTVNDEEALRAFKTLSKLEGIIPALESAHAIAYAMKMAEEMQRDDVLVVNLSGRGDKDMDIV 392          

HSP 2 Score: 28.8758 bits (63), Expect = 1.116e-38
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2
Query:  699 GGKPDVLLLCVGSGSKCVG 755
            GG PD ++ CVG GS  +G
Sbjct:  228 GGMPDAIIACVGGGSNAMG 246          
The following BLAST results are available for this feature:
BLAST of CN185134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_CLOB84.182e-3951.47Tryptophan synthase beta chain OS=Clostridium beij... [more]
TRPB_STRMK5.431e-3955.73Tryptophan synthase beta chain OS=Stenotrophomonas... [more]
TRPB_BORPE5.433e-3952.27Tryptophan synthase beta chain OS=Bordetella pertu... [more]
TRPB_HELPY6.573e-3952.03Tryptophan synthase beta chain OS=Helicobacter pyl... [more]
TRPB1_PYRFU6.574e-3950.66Tryptophan synthase beta chain 1 OS=Pyrococcus fur... [more]
TRPB_METJA7.062e-3956.06Tryptophan synthase beta chain OS=Methanocaldococc... [more]
TRPB_CAMJD8.564e-3951.47Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_STRGG9.166e-3951.49Tryptophan synthase beta chain OS=Streptomyces gri... [more]
TRPB_STRCO9.166e-3950.75Tryptophan synthase beta chain OS=Streptomyces coe... [more]
TRPB1_ARCFU1.116e-3853.03Tryptophan synthase beta chain 1 OS=Archaeoglobus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006N01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185134 ID=CN185134; Name=CN185134; organism=Citrus sinensis; type=EST; length=756bp
GCTTATAGATTGTACTTCCTATCAAAACAAATATCAACGAGTACAATAGT
TGCTTTGGCGATTGTGGCTCGGATTGGATCGAAAAACTTAGACATTAAAT
TAAAATATGCACAAAAGGGAGAAAAATAGGTCTTAAATTAATAGATTTCT
CGGGTTGCTGCTAAATTGACGGGAACCCTTAAATATTGTGGTCACCACTT
CTTCGATCCATTACAATTTCTACGTCGATAATTATTGATTGTATCTGTAA
TTGACGACCGTGTCGACGTCCTTATCCCCACCTCCACTACAGTTGACAAC
AACTTTTGCACCATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTA
ATGCATGAGATGCCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGC
CGTTGATATGCTTGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGC
ACGCCCAGTGTCCCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACT
CTAGCCCTACACCGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCT
TGCAACAAGTAGCTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGC
CAGAGTTGCAGCGTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCA
ACTCCAATCAATCTCACATCTTCATCATTTATGAATTCATGAAACAAACC
CAACGCATTTTGATCCACTGCCCACACAAAGCAGCAATACATCAGGCTTG
CCTCCC
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