CN185134
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_CLOB8 (Tryptophan synthase beta chain OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=trpB PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 4.182e-39 Identity = 70/136 (51.47%), Postives = 102/136 (75.00%), Query Frame = -1 Query: 247 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQ-AYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 651 +EAAG G+++G+HAAT+ K E G+ HG +SY+LQD +G +L +S+ GL+YPGVGPE ++L +T RAE+ + TD+EAV+ + L R+EGI PALE+SHA+A+ +KL TL + ++VN SG GDKD+D V+ Y Sbjct: 252 VEAAGKGIETGEHAATITKKEKGILHGMLSYVLQDNDGGVLEAYSISAGLDYPGVGPEHAYLAETNRAEYESITDEEAVRDGFMYLTRIEGIVPALESSHAVAYAKKLAQTLSSDKIIIVNISGRGDKDMDAVLAY 387 HSP 2 Score: 32.7278 bits (73), Expect = 4.182e-39 Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+G+F+ FI+DE+V LIGV Sbjct: 233 NAIGIFYPFIHDEEVNLIGV 252 HSP 3 Score: 21.9422 bits (45), Expect = 4.182e-39 Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD +L VG GS +G Sbjct: 218 GRLPDYILAPVGGGSNAIG 236
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STRMK (Tryptophan synthase beta chain OS=Stenotrophomonas maltophilia (strain K279a) GN=trpB PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 5.431e-39 Identity = 73/131 (55.73%), Postives = 93/131 (70.99%), Query Frame = -1 Query: 256 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 648 EAAG G+++G+HAA++A G GV HG +Y+L D++GQI+ THSV GL+YPGVGPE +FL DTGRA + TD+EA+QA+ L EGI PALE+SHALA KL P V+ N SG GDKDV T+ Sbjct: 267 EAAGDGINTGRHAASIAAGRPGVLHGNRTYVLCDDDGQIIETHSVSAGLDYPGVGPEHAFLADTGRARYLGITDEEALQAFHLLAHTEGILPALESSHALAQAIKLARERPRDQIVLCNLSGRGDKDVHTI 397 HSP 2 Score: 31.5722 bits (70), Expect = 5.431e-39 Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = -3 Query: 653 NALGLFHEFINDEDVRLIG 709 NA+GLFH F+ND V ++G Sbjct: 247 NAIGLFHAFLNDRQVEIVG 265 HSP 3 Score: 25.0238 bits (53), Expect = 5.431e-39 Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD + CVG GS +G Sbjct: 232 GRLPDAITACVGGGSNAIG 250
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_BORPE (Tryptophan synthase beta chain OS=Bordetella pertussis GN=trpB PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 5.433e-39 Identity = 69/132 (52.27%), Postives = 99/132 (75.00%), Query Frame = -1 Query: 256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651 +EAAG G+++G+HAA+LA G++GV HG +Y++Q+ +GQ+ THSV GL+YPGVGPE ++L+D+GRAE+ TD EA+ A+ CR+EGI PALE++HA+A K+ P L ++VN SG GDKD+ TV Sbjct: 260 VEAAGEGMETGRHAASLAAGQIGVLHGNRTYVMQNADGQVQETHSVSAGLDYPGVGPEHAWLKDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVKMTPALSKDKVILVNLSGRGDKDMHTV 391 HSP 2 Score: 30.8018 bits (68), Expect = 5.433e-39 Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+G+FH +I E+VRLIGV Sbjct: 241 NAMGIFHPYIPYENVRLIGV 260 HSP 3 Score: 21.9422 bits (45), Expect = 5.433e-39 Identity = 8/19 (42.11%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G +PD ++ VG GS +G Sbjct: 226 GRQPDYVVAAVGGGSNAMG 244
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 6.573e-39 Identity = 77/148 (52.03%), Postives = 107/148 (72.30%), Query Frame = -1 Query: 250 FMNS*MMKM*D*LELEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 693 F+N +K+ + +E AG GL++ KH ATL KG VG+ HG +YLLQD+EGQI +HS+ GL+YPGVGPE S+L+++GRA + +A+D EA++A++ LC+ EGI PALE+SHALA+ KL + +VVN SG GDKD+ TV N Sbjct: 242 FLNDKEVKL---IGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESIIVVNLSGRGDKDLSTVYN 386 HSP 2 Score: 25.7942 bits (55), Expect = 6.573e-39 Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = -2 Query: 690 PDVLLLCVGSGSKCVGFVS 746 PD ++ CVG GS +G S Sbjct: 222 PDYVIACVGGGSNAIGIFS 240
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRFU (Tryptophan synthase beta chain 1 OS=Pyrococcus furiosus GN=trpB1 PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 6.574e-39 Identity = 77/152 (50.66%), Postives = 107/152 (70.39%), Query Frame = -1 Query: 238 FMNS*MMKM*D*LELEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYN 693 F+N +K+ + +EA G GL+SGKH+A+L G+VGV+HG +SY LQDEEGQI THS+ GL+YPGVGPE ++L+ RAE+ T TD+EA++A+ L R EGI PALE++HA+A+ KL + ++VN SG GDKD+D V+ N Sbjct: 239 FVNDKKVKL---VGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSGN 387 HSP 2 Score: 26.5646 bits (57), Expect = 6.574e-39 Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PDV++ CVG GS +G Sbjct: 216 GQLPDVIVACVGGGSNAMG 234
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_METJA (Tryptophan synthase beta chain OS=Methanocaldococcus jannaschii GN=trpB PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.062e-39 Identity = 74/132 (56.06%), Postives = 95/132 (71.97%), Query Frame = -1 Query: 256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651 +EA G G+++G H A+L GEVGV HGA Y+ +DE GQI ++S+ GL+YPGVGPE+SFL+D GR + TD EA++A+Q LCRLEGI PALE+SHALA+ KL L +V+N SG GDKDV TV Sbjct: 265 VEAGGKGIETGMHGASLCAGEVGVLHGAKIYVKEDEFGQIEESYSISAGLDYPGVGPELSFLKDEGRIKAVCVTDDEALEAFQLLCRLEGILPALESSHALAYAVKLADKLDKDDIMVINLSGRGDKDVQTV 396 HSP 2 Score: 27.335 bits (59), Expect = 7.062e-39 Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PDV++ CVG GS +G Sbjct: 232 GRLPDVIVACVGGGSNAIG 250 HSP 3 Score: 24.2534 bits (51), Expect = 7.062e-39 Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA+G F+EF+ D+DV L V Sbjct: 247 NAIGAFYEFL-DDDVELYAV 265
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJD (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=trpB PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 8.564e-39 Identity = 70/136 (51.47%), Postives = 98/136 (72.06%), Query Frame = -1 Query: 244 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 651 +EA G G+D+ HAATL KGE G+ HG + +LQD+ G IL HSV GL+YPG+GP +FL ++ RA+++ +D+E +QA + LC+ EGI A+E+SHALAFLEKLCPTL + +V+N SG GDKD+ + Y+ Sbjct: 251 IEAGGLGVDTLYHAATLNKGETGIIHGMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKLLCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVINLSGRGDKDMQMIREYK 386 HSP 2 Score: 32.3426 bits (72), Expect = 8.564e-39 Identity = 12/20 (60.00%), Postives = 18/20 (90.00%), Query Frame = -3 Query: 650 NALGLFHEFINDEDVRLIGV 709 NA G+F++FI DE+V+LIG+ Sbjct: 232 NAAGIFYDFIKDENVKLIGI 251
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STRGG (Tryptophan synthase beta chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpB PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 9.166e-39 Identity = 69/134 (51.49%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 247 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 648 E AG G+++G+HAATL GE G+ HG+ SY+LQD+EGQI +S+ GL+YPG+GPE S+L+D GR E+ TD A+QA + L R EGI PA+E++HALA L L ++VN SG GDKD+DT Y Sbjct: 269 EPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHSYLKDVGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALDLGKELGKDGLILVNLSGRGDKDMDTAARY 402 HSP 2 Score: 33.4982 bits (75), Expect = 9.166e-39 Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = -3 Query: 653 NALGLFHEFINDEDVRLIG 709 NA+GLFH FI DE VRL+G Sbjct: 249 NAIGLFHAFIPDEGVRLVG 267 HSP 3 Score: 24.6386 bits (52), Expect = 9.166e-39 Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD + CVG GS +G Sbjct: 234 GRLPDAAVACVGGGSNAIG 252
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB_STRCO (Tryptophan synthase beta chain OS=Streptomyces coelicolor GN=trpB PE=3 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 9.166e-39 Identity = 68/134 (50.75%), Postives = 94/134 (70.15%), Query Frame = -1 Query: 247 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 648 E AG G+++G+HAATL GE G+ HG+ SY+LQD+EGQI +S+ GL+YPG+GPE ++L+D+GR E+ TD A+QA + L R EGI PA+E++HALA ++ L +VVN SG GDKD+DT Y Sbjct: 269 EPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALEVGRELGRDGLLVVNLSGRGDKDMDTAARY 402 HSP 2 Score: 34.2686 bits (77), Expect = 9.166e-39 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = -3 Query: 653 NALGLFHEFINDEDVRLIG 709 NA+GLFH FI D DVRLIG Sbjct: 249 NAIGLFHAFIPDADVRLIG 267 HSP 3 Score: 25.0238 bits (53), Expect = 9.166e-39 Identity = 9/19 (47.37%), Postives = 11/19 (57.89%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 G PD + CVG GS +G Sbjct: 234 GRLPDAAIACVGGGSNAIG 252
BLAST of CN185134 vs. ExPASy Swiss-Prot
Match: TRPB1_ARCFU (Tryptophan synthase beta chain 1 OS=Archaeoglobus fulgidus GN=trpB1 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.116e-38 Identity = 70/132 (53.03%), Postives = 98/132 (74.24%), Query Frame = -1 Query: 256 LEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 651 +EA G G++SG+H+A+L G GV HG +SY LQDEEG +L THSV GL+YPGVGPE ++L++TGR E+ T D+EA++A++ L +LEGI PALE++HA+A+ K+ + +VVN SG GDKD+D V Sbjct: 261 VEAGGEGIESGRHSASLTAGSKGVLHGMLSYFLQDEEGMMLDTHSVSAGLDYPGVGPEHAYLKETGRCEYVTVNDEEALRAFKTLSKLEGIIPALESAHAIAYAMKMAEEMQRDDVLVVNLSGRGDKDMDIV 392 HSP 2 Score: 28.8758 bits (63), Expect = 1.116e-38 Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = -2 Query: 699 GGKPDVLLLCVGSGSKCVG 755 GG PD ++ CVG GS +G Sbjct: 228 GGMPDAIIACVGGGSNAMG 246 The following BLAST results are available for this feature:
BLAST of CN185134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185134 ID=CN185134; Name=CN185134; organism=Citrus sinensis; type=EST; length=756bpback to top |