CN185132

Overview
NameCN185132
Unique NameCN185132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185132_ssr75 microsatellite CN185132_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8244 contig Csv1_Contig8244:32..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: YD387_YEAST (Probable metabolite transport protein YDR387C OS=Saccharomyces cerevisiae GN=YDR387C PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 53/143 (37.06%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  302 PYVLRLAFS-----AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXW-MNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            PY L    S     A IGGLLFGYDTGVISG LL ++ +  S+   T +Q+ +++ +            + + DR+GRR ++ +   +F + A+ MA A     LI GR+ VG+ VG+++   PL++SE SP++IRG +++ N
Sbjct:   32 PYALTFKTSLIFVGATIGGLLFGYDTGVISGVLLSLKPEDLSLVVLTDVQKELITSSTSVGSFFGSILAFPLADRYGRRITLAICCSIFILAAIGMAIARTLTFLICGRLLVGIAVGVSAQCVPLFLSEISPSRIRGFMLTLN 174          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  299 NPYVLRLAFS----AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            NP++ + AF     A I  ++FGYDTGV+SGA ++IRDD K  D +  +   I+++               +D  GRR +I ++  +F VG+V+M   PN   L+ GR   G+GVG A M +P+Y +E S A  RG L S
Sbjct:   15 NPHMNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSLTAGKT---SDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYSAEISSASHRGFLTS 151          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: ITR2_YEAST (Myo-inositol transporter 2 OS=Saccharomyces cerevisiae GN=ITR2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 51/141 (36.17%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  299 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLL---QESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            +P+++ L F A I G +FGYDTG IS AL+ I  D   +D K L    +E I +                 D FGRR  ++ ++ +F +GA++   A     +  GR+ +G GVG+ S+ SPL+ISE +P  IRG L   N
Sbjct:  106 SPFIITLTFVASISGFMFGYDTGYISSALISINRD---LDNKVLTYGEKELITAATSLGALITSVGAGTAADVFGRRPCLMFSNLMFLIGAILQITAHKFWQMAAGRLIMGFGVGIGSLISPLFISEIAPKMIRGRLTVIN 243          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: XYLT_LACBR (D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  323 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            F   +GGLLFGYDTGVISGA+L+I+   K ++  +  Q  +VS  +             +DRFGRR  +L++  +FFVGA+  A +P    LI  R+ +G+ VG AS   P Y++E +P+  RG + S
Sbjct:   11 FFGALGGLLFGYDTGVISGAILFIQ---KQMNLGSWQQGWVVSAVLLGAILGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPSDKRGTVSS 135          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 47/134 (35.07%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  305 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            YV+  AF A +  +L GYD GV+SGA+L+I+ D K  + +T   E ++                 +D  GR+ ++ +A  +F  GA +MA AP+   L+ GR   G+G+G+  M +P+YI+E SP   RG   S
Sbjct:   54 YVMACAFFASLNNVLLGYDVGVMSGAVLFIQQDLKITEVQT---EVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTS 184          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: MSSP2_ARATH (Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.247e-17
Identity = 45/128 (35.16%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  317 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL 700
            +A +A +G LL G+D   I+GA+LYI+ +F +++    ++  IV+M++            + D  GRR  ++++  L+FVG+++M  +PN   L+ GR+  G GVG+     P+YISE +P +IRG L
Sbjct:    7 VAIAAAVGNLLQGWDNATIAGAVLYIKKEF-NLESNPSVEGLIVAMSLIGATLITTCSGGVADWLGRRPMLILSSILYFVGSLVMLWSPNVYVLLLGRLLDGFGVGLVVTLVPIYISETAPPEIRGLL 133          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: MSSP3_ARATH (Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 42/131 (32.06%), Postives = 83/131 (63.36%), Query Frame = 2
Query:  308 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL 700
            V+ +A +A IG +L G+D   I+GA++YI+ +F  ++++  ++  IV+M++            ++D+ GRR+ ++++  L+F+ +++M  +PN   L+  R+  G G+G+A    P+YISE +P++IRG L
Sbjct:    4 VVLVALAAAIGNMLQGWDNATIAGAVIYIKKEFH-LEKEPKIEGLIVAMSLIGATLITTFSGPVSDKVGRRSMLILSSVLYFLSSIVMFWSPNVYVLLFARLLDGFGIGLAVTLVPIYISETAPSEIRGLL 133          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  308 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            VL     A +G +LFGY  GV++GAL Y+  D   +   T+LQ  IVS  +            + D+FGR  +  +      +GA + A A +   +I GR+  G+G+G++S   PLYISE SP +IRGAL S N
Sbjct:  105 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 238          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  299 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLL---QESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            +P+++ L F A I G +FGYDTG IS AL+ I  D   +D K L    +E + +                 D FGR+  ++ ++ +F +GA++  +A     +  GR+ +G GVG+ S+ +PL+ISE +P  IRG L   N
Sbjct:   83 SPFIITLTFVASISGFMFGYDTGYISSALISIGTD---LDHKVLTYGEKEIVTAATSLGALITSIFAGTAADIFGRKRCLMGSNLMFVIGAILQVSAHTFWQMAVGRLIMGFGVGIGSLIAPLFISEIAPKMIRGRLTVIN 220          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: XYLE_ECOLI (D-xylose-proton symporter OS=Escherichia coli (strain K12) GN=xylE PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  293 WKNPYVLRLAFSAGIGGLLFGYDTGVISGAL-----LYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMA------AAPNPG------------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF 718
            + + Y+  +   A +GGLLFGYDT VISG +     +++     S      L    V+ A+           + ++RFGRR S+ +A  LFF+  V  A       + NP               +  R+  G+GVG+ASM SP+YI+E +PA IRG LVS N F
Sbjct:    5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169          
The following BLAST results are available for this feature:
BLAST of CN185132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
YD387_YEAST1.272e-1737.06Probable metabolite transport protein YDR387C OS=S... [more]
PLT3_ARATH1.272e-1737.86Probable polyol transporter 3 OS=Arabidopsis thali... [more]
ITR2_YEAST1.272e-1736.17Myo-inositol transporter 2 OS=Saccharomyces cerevi... [more]
XYLT_LACBR2.170e-1739.84D-xylose-proton symporter OS=Lactobacillus brevis ... [more]
PLT4_ARATH4.835e-1735.07Probable polyol transporter 4 OS=Arabidopsis thali... [more]
MSSP2_ARATH8.247e-1735.16Monosaccharide-sensing protein 2 OS=Arabidopsis th... [more]
MSSP3_ARATH1.077e-1632.06Monosaccharide-sensing protein 3 OS=Arabidopsis th... [more]
PLST4_ARATH1.407e-1637.78Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]
ITR1_YEAST1.407e-1634.04Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
XYLE_ECOLI1.191e-1533.94D-xylose-proton symporter OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185132 ID=CN185132; Name=CN185132; organism=Citrus sinensis; type=EST; length=722bp
GAGGCTTTCCTTCACTCACTTTCTTTCTCCCCCACCCCCAGTCCATTTTC
CCGGAAAATTTACTCACTATCACTATCATCATCATCACTCCCTTATATAG
TTATTTATAGTCCAAGTCCAACCACACCAAACCATTTTCTTGCCAAAATA
AAGAAAACAAACTCCTAAATTGTATATCTTTTAACAGATATTAATTTGTA
AAAAAAAAAAAAAAGGCCTGAAAATGGAGGGAGCAGTACATGGAGGAGGG
ACGACAGATGCGTCAGCGTTTCGAGAATGCTTCTCTTTGTCTTGGAAAAA
TCCCTACGTTCTTCGACTTGCTTTCTCTGCTGGAATTGGCGGCCTTCTCT
TTGGCTACGACACTGGAGTCATATCAGGCGCGCTACTTTATATCAGAGAT
GACTTCAAATCCGTCGATAGAAAGACTTTACTGCAGGAAAGCATAGTTAG
CATGGCTGTTGCTGGAGCAATCATTGGAGCTGCAATCGGTGGATGGATGA
ATGATCGCTTTGGAAGGAGAACTTCAATCCTTGTTGCAGATTTCCTGTTC
TTCGTTGGTGCTGTGATCATGGCTGCTGCTCCTAACCCTGGTGCCCTTAT
CACTGGACGAGTATTTGTAGGACTTGGTGTGGGAATGGCATCAATGACAT
CCCCGCTCTACATCTCTGAAGCTTCTCCAGCTAAAATTCGTGGTGCTCTT
GTTAGCACCAACGGCTTTCTTA
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