CN185132

Overview
NameCN185132
Unique NameCN185132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185132_ssr75 microsatellite CN185132_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8244 contig Csv1_Contig8244:32..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: XYLE_ECO57 (D-xylose-proton symporter OS=Escherichia coli O157:H7 GN=xylE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  293 WKNPYVLRLAFSAGIGGLLFGYDTGVISGAL-----LYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMA------AAPNPG------------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF 718
            + + Y+  +   A +GGLLFGYDT VISG +     +++     S      L    V+ A+           + ++RFGRR S+ +A  LFF+  V  A       + NP               +  R+  G+GVG+ASM SP+YI+E +PA IRG LVS N F
Sbjct:    5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  296 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            ++ +    A  A +  ++ GYD GV+SGA ++I+DD K  D +  +   I+++               +D  GRR +I++A F FF GA++M  A N   ++ GR   G+GVG A M +P+Y +E +PA  RG L S
Sbjct:   22 RSRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIGSGAAGRT---SDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTTEVAPASSRGFLSS 155          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: XYLL3_ARATH (D-xylose-proton symporter-like 3 OS=Arabidopsis thaliana GN=At5g59250 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  245 GGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKS----VDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            G   D+ A     S SW +  +L   F A +GGLLFGYD G  SGA L ++    S     +   +    +VS ++            + D  GRR  +++A  L+ +G++I   AP+   L+ GR+  G G+G+A   +PLYI+E  P++IRG L+S
Sbjct:   79 GEVADSLASDAPESFSWSS-VILPFIFPA-LGGLLFGYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLIS 234          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 2
Query:  296 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSM-AVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            ++ Y    A  A +  ++ GYD GV+SGA ++I+DD K  D +  +   I+++ ++           W+    GRR +I++A   FF GA++M  A N   ++ GR   G+GVG A M +P+Y +E +PA  RG L S
Sbjct:   22 RSRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGAAGRTSDWL----GRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTAEVAPASSRGFLTS 155          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: YNCC_BACSU (Putative metabolite transport protein yncC OS=Bacillus subtilis GN=yncC PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  296 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYI-RDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            +N  +  +  SA  GGLLFGYDTGVI+GAL ++ R D   +D   + +  + S+ +            + DR+GRR  IL   FLFF+ ++  A APN   +   R  +GL VG AS   P +++E +P + RG +V+ N
Sbjct:    7 RNRRLKLIMISATFGGLLFGYDTGVINGALPFMARPD--QLDLTPVTEGLVTSILLLGAAFGALLCGRLADRYGRRKMILNLSFLFFLASLGTALAPNVFIMAVFRFLLGLAVGGASAMVPAFLAEMAPHEKRGRMVTQN 144          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: IOLT_BACSU (Major myo-inositol transporter iolT OS=Bacillus subtilis GN=iolT PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  338 GGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            GGLLFGYDTGV++GAL Y+ +    ++     +  + S  +            M+D  GRR +IL    +FF+  +    APN   +I  R  +G+ VG AS+T P Y++E SP + RG +V+ N
Sbjct:   21 GGLLFGYDTGVLNGALPYMGEP-DQLNLNAFTEGLVTSSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAEMSPVESRGRMVTQN 144          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GTR12_HUMAN (Solute carrier family 2, facilitated glucose transporter member 12 OS=Homo sapiens GN=SLC2A12 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  326 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLL------QESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            +A + GLL GY+ G+ISGALL I         KTLL      QE +VS  V            + DR+GRRT+I+++  L  +G++++  + +   LI GR+ +G+ + ++S+ + +YI+E +P   RG LVS N
Sbjct:   46 TAAVSGLLVGYELGIISGALLQI---------KTLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLN 171          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GTR10_XENLA (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus laevis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.317e-14
Identity = 47/129 (36.43%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  320 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            A S+ +GGL+FGY+ G+ISGALL ++  F+        QE++VS  +           ++ DR GRRTSI+ ++ +   G++I+ A  +   L+ GRV VG  + ++SM   +Y+SE      RG LVS
Sbjct:   12 ATSSLLGGLIFGYELGIISGALLMLKTVFQLT---CFEQEALVSAVLFGALLASLIGGFIIDRSGRRTSIMGSNLVVLAGSIILIATSSFWWLVVGRVTVGFAISISSMACCIYVSEIVRPHQRGTLVS 137          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GTR12_MACFA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Macaca fascicularis GN=SLC2A12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 52/171 (30.41%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  218 LKMEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLL------QESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            ++ EG+    G+      R C   ++ +      + +A + GLL GY+ G+ISGALL I         KTLL      QE +VS  +            + DR+GRRT+I+++  L  +G++++  + +   LI GR+ +G+ + ++S+ + +YI+E +P   RG LVS N
Sbjct:   20 VETEGSYRASGSRHPPWARGCGMFTFLS------SVTAAVSGLLVGYELGIISGALLQI---------KTLLTLSCHEQEMVVSSLLIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLN 175          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: STP14_ARATH (Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 52/171 (30.41%), Postives = 77/171 (45.03%), Query Frame = 2
Query:  242 GGGTTDASAFRECFSLSWK-NPYVLRLAFSAGIGGLLFGYDTGVISGALL---YIRDDFKSVDRKTLLQES--------------IVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL 700
            GG  TD    +       +   Y +       +GG LFGYD GV  G      ++++ F  + ++  +  +                S              ++   +GRR SILV    FF+G VI AAA N   LI GR+F+G+G+G  +   PLY+SE +PAKIRG +
Sbjct:    3 GGALTDEGGLKRAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTV 173          
The following BLAST results are available for this feature:
BLAST of CN185132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
XYLE_ECO571.191e-1533.94D-xylose-proton symporter OS=Escherichia coli O157... [more]
PLT2_ARATH1.191e-1534.31Putative polyol transporter 2 OS=Arabidopsis thali... [more]
XYLL3_ARATH2.031e-1533.54D-xylose-proton symporter-like 3 OS=Arabidopsis th... [more]
PLT1_ARATH2.031e-1534.06Putative polyol transporter 1 OS=Arabidopsis thali... [more]
YNCC_BACSU4.525e-1536.43Putative metabolite transport protein yncC OS=Baci... [more]
IOLT_BACSU1.317e-1436.00Major myo-inositol transporter iolT OS=Bacillus su... [more]
GTR12_HUMAN1.317e-1435.56Solute carrier family 2, facilitated glucose trans... [more]
GTR10_XENLA1.317e-1436.43Solute carrier family 2, facilitated glucose trans... [more]
GTR12_MACFA1.720e-1430.41Solute carrier family 2, facilitated glucose trans... [more]
STP14_ARATH2.246e-1430.41Sugar transport protein 14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185132 ID=CN185132; Name=CN185132; organism=Citrus sinensis; type=EST; length=722bp
GAGGCTTTCCTTCACTCACTTTCTTTCTCCCCCACCCCCAGTCCATTTTC
CCGGAAAATTTACTCACTATCACTATCATCATCATCACTCCCTTATATAG
TTATTTATAGTCCAAGTCCAACCACACCAAACCATTTTCTTGCCAAAATA
AAGAAAACAAACTCCTAAATTGTATATCTTTTAACAGATATTAATTTGTA
AAAAAAAAAAAAAAGGCCTGAAAATGGAGGGAGCAGTACATGGAGGAGGG
ACGACAGATGCGTCAGCGTTTCGAGAATGCTTCTCTTTGTCTTGGAAAAA
TCCCTACGTTCTTCGACTTGCTTTCTCTGCTGGAATTGGCGGCCTTCTCT
TTGGCTACGACACTGGAGTCATATCAGGCGCGCTACTTTATATCAGAGAT
GACTTCAAATCCGTCGATAGAAAGACTTTACTGCAGGAAAGCATAGTTAG
CATGGCTGTTGCTGGAGCAATCATTGGAGCTGCAATCGGTGGATGGATGA
ATGATCGCTTTGGAAGGAGAACTTCAATCCTTGTTGCAGATTTCCTGTTC
TTCGTTGGTGCTGTGATCATGGCTGCTGCTCCTAACCCTGGTGCCCTTAT
CACTGGACGAGTATTTGTAGGACTTGGTGTGGGAATGGCATCAATGACAT
CCCCGCTCTACATCTCTGAAGCTTCTCCAGCTAAAATTCGTGGTGCTCTT
GTTAGCACCAACGGCTTTCTTA
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