CN185132

Overview
NameCN185132
Unique NameCN185132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185132_ssr75 microsatellite CN185132_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8244 contig Csv1_Contig8244:32..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GTR12_MOUSE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  326 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            +A I GLL GY+ G+ISGALL IR        +   QE +VS  +            + DR+GRR +I+++  L  +G++++  + +   LI GRV +G+ + ++S+ + +YI+E +P   RG LVS N
Sbjct:   50 TAAISGLLVGYELGLISGALLQIRTLLALTCHE---QEMVVSSLLIGAFLASLTGGVLIDRYGRRLAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLN 175          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GTR12_BOVIN (Solute carrier family 2, facilitated glucose transporter member 12 OS=Bos taurus GN=SLC2A12 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 47/142 (33.10%), Postives = 77/142 (54.23%), Query Frame = 2
Query:  305 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLL------QESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN 712
            Y L  + +A + G L GY+ G+ISGALL IR         TLL      QE +VS  +            + DR+GRR +I+++  L  +G++++  + +   LI GR+ +G+ + ++S  + +YI+E +P   RG LVS N
Sbjct:   43 YTLLSSVTAAVSGFLVGYELGIISGALLQIR---------TLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLN 175          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 2
Query:  308 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKS----VDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF 718
            +L   F A +GGLL+GY+ G  S A + ++    S     +  ++    + S ++            + D  GRR  +++A  L+ VGA++ A AP    LI GRV  G+ VG+A   +P+YI+E +P+ IRG LVS   F
Sbjct:   48 ILPFLFPA-LGGLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEF 187          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: HGT1_KLULA (High-affinity glucose transporter OS=Kluyveromyces lactis GN=HGT1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 2
Query:  299 NPYVLRLAFSAGIGGLLFGYDTGVIS---GALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL 700
            N YV+   F A I GL+FG+D   +S   G  +Y +D F + D  +L    I +                +D FGR+ S+ +   L+ +GA++  AA +   LI GRV  G+G+G  S  +P+Y SE SP KIRG +
Sbjct:   27 NIYVI--GFIACISGLMFGFDIASMSSMIGTDVY-KDYFSNPD--SLTYGGITASMAGGSFLGSLISPNFSDAFGRKVSLHICAALWIIGAILQCAAQDQAMLIVGRVISGMGIGFGSSAAPVYCSEISPPKIRGTI 158          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GLCP_SYNY3 (Glucose transport protein OS=Synechocystis sp. (strain PCC 6803) GN=gtr PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  305 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            +VL ++  A +GG LFG+DT VI+GA+  ++  F++    +LL    VS+A+            + DR GR  ++++A  LF + ++           I  RV  G+GVG AS+ +P YI+E SPA +RG L S
Sbjct:   16 FVLLISGVAALGGFLFGFDTAVINGAVAALQKHFQT---DSLLTGLSVSLALLGSALGAFGAGPIADRHGRIKTMILAAVLFTLSSIGSGLPFTIWDFIFWRVLGGIGVGAASVIAPAYIAEVSPAHLRGRLGS 146          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 51/155 (32.90%), Postives = 71/155 (45.81%), Query Frame = 2
Query:  305 YVLRLAFSAGIGGLLFGYDTGVISGALL---YIRDDFKSVDRK--------------TLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF 718
            +V      A +GG++FGYD GV  G      +++  F  V RK              + L  S  S               +   FGR+ SIL+   +F   A +  AA N   LI GRV +G+GVG A+   PLY+SE +P + RGA+   NGF
Sbjct:   21 FVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAI--NNGF 173          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GTR10_HUMAN (Solute carrier family 2, facilitated glucose transporter member 10 OS=Homo sapiens GN=SLC2A10 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  299 NPYVLRLAFSAGI-GGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            +P VL L  S  + GGL FGY+  VISGALL ++ DF       L QE +V   +           ++ D +GR+ +IL ++ +   G++ +  A +   L+ GR  VG  + ++SM   +Y+SE    + RG LVS
Sbjct:    4 SPPVLPLCASVSLLGGLTFGYELAVISGALLPLQLDF---GLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVS 137          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: GTR10_MOUSE (Solute carrier family 2, facilitated glucose transporter member 10 OS=Mus musculus GN=Slc2a10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  302 PYVLRLAFSAGI-GGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVS 706
            P VL L  S  + GGL FGY+  VISGALL ++ +F       L QE +V   +           ++ D +GRR +IL ++ +   G++I+  A +   L+ GR+ VG  + ++SM   +Y+SE    + RG LVS
Sbjct:    5 PAVLLLCASVSLLGGLTFGYELAVISGALLPLQLNF---GLSCLEQELLVGSLLLGALLASLVGGFLIDCYGRRRAILGSNAVLLAGSLILGLASSLPWLLLGRLSVGFAISLSSMACCIYVSELVGPRQRGVLVS 137          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: SNF3_YEAST (High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae GN=SNF3 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  335 IGGLLFGYDTGVISG--ALLYIRDDFK-SVDRKTLLQESI-VSMAVXXXXXXXXXXXWMNDRFGRRTSILVAD-FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST 709
            +GG LFGYDTG+I+   ++ Y++     + D  T  Q SI VS              +++D +GR+ +I+ +  F+F +G  +   A     LI GRV  G+G+G  S   PLY +EA+   +RGA++ST
Sbjct:  106 VGGFLFGYDTGLINSITSMNYVKSHVAPNHDSFTAQQMSILVSFLSLGTFFGALTAPFISDSYGRKPTIIFSTIFIFSIGNSLQVGAGGITLLIVGRVISGIGIGAISAVVPLYQAEATHKSLRGAIIST 235          
BLAST of CN185132 vs. ExPASy Swiss-Prot
Match: HGT1_CANAL (High-affinity glucose transporter OS=Candida albicans GN=HGT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 46/134 (34.33%), Postives = 69/134 (51.49%), Query Frame = 2
Query:  308 VLRLAFSAGIGGLLFGYDTGVIS---GALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL 700
            V  +A  + I G++FG+D   +S   GA  Y+R  F S      +Q  I S              ++++ FGRR S+L   F + VGA I ++  N   LI GR+  G+GVG  S  +P+Y +E +P KIRG +
Sbjct:   29 VFFIASISTIAGMMFGFDISSMSAFIGAEHYMRY-FNSPGSD--IQGFITSSMALGSFFGSIASSFVSEPFGRRLSLLTCAFFWMVGAAIQSSVQNRAQLIIGRIISGIGVGFGSAVAPVYGAELAPRKIRGLI 159          
The following BLAST results are available for this feature:
BLAST of CN185132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GTR12_MOUSE2.483e-1334.88Solute carrier family 2, facilitated glucose trans... [more]
GTR12_BOVIN3.243e-1333.10Solute carrier family 2, facilitated glucose trans... [more]
XYLL2_ARATH4.236e-1333.33D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]
HGT1_KLULA7.225e-1335.04High-affinity glucose transporter OS=Kluyveromyces... [more]
GLCP_SYNY32.102e-1235.07Glucose transport protein OS=Synechocystis sp. (st... [more]
HEX6_RICCO3.586e-1232.90Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
GTR10_HUMAN1.043e-1133.58Solute carrier family 2, facilitated glucose trans... [more]
GTR10_MOUSE1.363e-1134.56Solute carrier family 2, facilitated glucose trans... [more]
SNF3_YEAST1.780e-1134.62High-affinity glucose transporter SNF3 OS=Saccharo... [more]
HGT1_CANAL1.780e-1134.33High-affinity glucose transporter OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185132 ID=CN185132; Name=CN185132; organism=Citrus sinensis; type=EST; length=722bp
GAGGCTTTCCTTCACTCACTTTCTTTCTCCCCCACCCCCAGTCCATTTTC
CCGGAAAATTTACTCACTATCACTATCATCATCATCACTCCCTTATATAG
TTATTTATAGTCCAAGTCCAACCACACCAAACCATTTTCTTGCCAAAATA
AAGAAAACAAACTCCTAAATTGTATATCTTTTAACAGATATTAATTTGTA
AAAAAAAAAAAAAAGGCCTGAAAATGGAGGGAGCAGTACATGGAGGAGGG
ACGACAGATGCGTCAGCGTTTCGAGAATGCTTCTCTTTGTCTTGGAAAAA
TCCCTACGTTCTTCGACTTGCTTTCTCTGCTGGAATTGGCGGCCTTCTCT
TTGGCTACGACACTGGAGTCATATCAGGCGCGCTACTTTATATCAGAGAT
GACTTCAAATCCGTCGATAGAAAGACTTTACTGCAGGAAAGCATAGTTAG
CATGGCTGTTGCTGGAGCAATCATTGGAGCTGCAATCGGTGGATGGATGA
ATGATCGCTTTGGAAGGAGAACTTCAATCCTTGTTGCAGATTTCCTGTTC
TTCGTTGGTGCTGTGATCATGGCTGCTGCTCCTAACCCTGGTGCCCTTAT
CACTGGACGAGTATTTGTAGGACTTGGTGTGGGAATGGCATCAATGACAT
CCCCGCTCTACATCTCTGAAGCTTCTCCAGCTAAAATTCGTGGTGCTCTT
GTTAGCACCAACGGCTTTCTTA
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