DC887687

Overview
NameDC887687
Unique NameDC887687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_SHIB3 (Triosephosphate isomerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 75/148 (50.68%), Postives = 92/148 (62.16%), Query Frame = -1 
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 641
            E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A     IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PELPD (Triosephosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 73/136 (53.68%), Postives = 92/136 (67.65%), Query Frame = -1 
Query:  240 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQ-TKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 641
            E +E V  K   A++ GL  I CVGET+E+RE+ +T  VV  Q T A+A  +S  +S IV+AYEPVWAIGTGK AT  QAQEVH  +R  +  + S  IA + RI+YGGSV   N + L AQPD+DG L+GGASLK
Sbjct:  104 ETDEGVNRKARAAVAVGLTAIICVGETMEERESRATFTVVGRQVTAALAGFLSHEFSRIVIAYEPVWAIGTGKTATDQQAQEVHCYIRNLVTMSISQAIADSLRILYGGSVKPDNIRGLMAQPDIDGALIGGASLK 239
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBL (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = -1 
Query:  240 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL--LANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 641
            E N F  +K+ + L     V+ CVGETL +RE+G T EV+++Q +     + S  +SN++LAYEPVWAIGTGKVATPAQAQEVHF +RK +  L   + EIA +  I+YGGSV   N + L  + D+DG LVGGAS K
Sbjct:  105 ETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRKEIAGLFLGAKEIAESISILYGGSVKPDNIQTLLKEKDLDGGLVGGASQK 242
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBJ (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = -1 
Query:  240 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL--LANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 641
            E N F  +K+ + L     V+ CVGETL +RE+G T EV+++Q +     + S  +SN++LAYEPVWAIGTGKVATPAQAQEVHF +RK +  L   + EIA +  I+YGGSV   N + L  + D+DG LVGGAS K
Sbjct:  105 ETNSFCNEKIHFLLKNDFIVLYCVGETLMERESGKTFEVISSQIREGLKGIHSHSFSNLILAYEPVWAIGTGKVATPAQAQEVHFFIRKEIAGLFLGAKEIAESISILYGGSVKPDNIQTLLKEKDLDGGLVGGASQK 242
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_HAEDU (Triosephosphate isomerase OS=Haemophilus ducreyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 73/148 (49.32%), Postives = 96/148 (64.86%), Query Frame = -1 
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 641
            E ++F+  K A   + GL  + C+GET  + EAG T +V A Q  AI +   V +++  V+AYEP+WAIGTGK ATPAQAQ VH  +R+  +A  S  +A    I YGGSVN  N  EL +QPD+DG LVGGASLK   F +I+K+AE
Sbjct:  106 ESDQFIAKKFAALKTAGLTPVLCIGETEAENEAGQTQQVCARQIDAIINSLGVEAFNQAVIAYEPIWAIGTGKSATPAQAQAVHAFIRQH-IAEKSQAVADQLIIQYGGSVNDTNAAELFSQPDIDGALVGGASLKATAFAEIVKAAE 252
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ESCF3 (Triosephosphate isomerase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 75/148 (50.68%), Postives = 92/148 (62.16%), Query Frame = -1 
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 641
            E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A     IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 74/148 (50.00%), Postives = 93/148 (62.84%), Query Frame = -1 
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 641
            E +EF+  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    ++A    I YGGSVN +N  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:  104 ESDEFIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKVAEQVIIQYGGSVNASNAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ECOUT (Triosephosphate isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 75/148 (50.68%), Postives = 92/148 (62.16%), Query Frame = -1 
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 641
            E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A     IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSM (Triosephosphate isomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 75/148 (50.68%), Postives = 92/148 (62.16%), Query Frame = -1 
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 641
            E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A     IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSE (Triosephosphate isomerase OS=Escherichia coli (strain SE11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 75/148 (50.68%), Postives = 92/148 (62.16%), Query Frame = -1 
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 641
            E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      +++   V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A     IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:  104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
The following BLAST results are available for this feature:
BLAST of DC887687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHIB31.545e-2950.68Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_PELPD1.545e-2953.68Triosephosphate isomerase OS=Pelobacter propionicu... [more]
TPIS_LEPBL1.545e-2951.45Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_LEPBJ1.545e-2951.45Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_HAEDU1.545e-2949.32Triosephosphate isomerase OS=Haemophilus ducreyi G... [more]
TPIS_ESCF31.545e-2950.68Triosephosphate isomerase OS=Escherichia fergusoni... [more]
TPIS_ENTCL1.545e-2950.00Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_ECOUT1.545e-2950.68Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSM1.545e-2950.68Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSE1.545e-2950.68Triosephosphate isomerase OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionDC887687 EIC Citrus sinensis cDNA clone EIC0735 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887687 ID=DC887687; Name=DC887687; organism=Citrus sinensis; type=EST; length=644bp
GGTAAACACTACATAAGACTTATTCAACTCCAGCACTTAGGAAACAAAGA
TAATTAAAAAAGTTTAAAAAAAGGTTTCAGTTGGTCGCGCTTATCAAAAA
CAAAAGTAATTCTGAAATTATACCAAACGTATTCTATATATCCACAAACA
GTAAATACTTCATCAGCAAACTGCGCTTGAAATAAAGCTCAAGAATTTTA
CTTCAGCTCAGCAGATTTGATGATGTCAATGAACTCCGGCTTCAACGAAG
CACCACCAACCAAAAATCCGTCAACATCAGGCTGTGCAGCCAATTCCTTG
CAGTTTGCACCATTTACGGATCCTCCGTAGATGATCCGTGTTGCTGCAGC
AATTTCAGGACTGGTGTTTGCAAGAAGCCATTTCCTCAGTTCAAAATGTA
CTTCTTGAGCCTGCGCTGGAGTGGCAACCTTCCCAGTTCCAATAGCCCAC
ACAGGTTCATAGGCCAAAACAATGTTTGACCAGCTTGAGACTCGATCTGC
GATTGCTTTAGTTTGTGCAGCAACAACTTCCATAGTAGATCCTGCTTCAC
GCTGCTCAAGTGTCTCACCAACACAAGCAATCACCTTCAAACCTTGAGAA
AGTGCATATGCAACCTTATCCCCAACAAACTCATTTAATTCATT
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