DC887687

Overview
NameDC887687
Unique NameDC887687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_BIFAA (Triosephosphate isomerase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = -1
Query:  240 DKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 620
            D+V   L+ G++ I CVGE+ E+R  G  ++    Q   +   +S    + +++AYEPVWAIGTG VATP  AQ+    +R  L       +    RI+YGGSV+  N  EL  +PDVDGFL+GG++LK
Sbjct:  120 DQVRAVLAAGMQPILCVGESYEERRKGIELDFAVGQVHDVTRDLSDEEAAKLIVAYEPVWAIGTGMVATPQSAQDAARAIRNDLSDTFGTRVGETVRILYGGSVSSKNAVELINEPDVDGFLIGGSALK 248          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMO (Triosephosphate isomerase OS=Mycoplasma mobile GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 64/144 (44.44%), Postives = 87/144 (60.42%), Query Frame = -1
Query:  216 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 644
            +E +E V  K+  A+   L  I CVGET  Q  +  + EV+  Q +     +S +S I++AYEP+WAIGTGK AT   AQ    E+ K++ + T+ +    T I YGGSV   N KEL +Q D+DG LVGGASL   +FID+IK
Sbjct:  107 HETDEIVNMKMHQAIKNNLVPIVCVGETELQYNSNKSKEVIKNQIEKSLKNLSDFSKIIIAYEPIWAIGTGKTATVEYAQ----EMCKYIRSLTNEK----TIIQYGGSVKPNNIKELLSQKDIDGALVGGASLNVKDFIDLIK 242          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJA (Triosephosphate isomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 64/142 (45.07%), Postives = 82/142 (57.75%), Query Frame = -1
Query:  219 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 641
            E +E V  ++A A   GL  I CVGE+L+QRE G T   +  Q       +    N+V+AYEP+WAIGTGK    A+A  V   +R+ L A+  P       I+YGGSV  +N  EL AQP +DG LVGGASL P EF  I+
Sbjct:  109 ETDETVNRRLAAAQRHGLTPILCVGESLQQREQGLTESWIVGQLDRALPGIDL-RNLVIAYEPIWAIGTGKTCAAAEANRVIGLIRQHLGADHLP-------ILYGGSVKASNIDELMAQPQIDGVLVGGASLDPQEFARIV 242          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 63/149 (42.28%), Postives = 84/149 (56.38%), Query Frame = -1
Query:  216 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 644
            +E ++ +  K     + GL  I C GE+LE  EAG  +E V AQ  A    +S    S++V+AYEP+WAIGTGK AT   AQ +   +R  + A+    +A   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  104 HETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 63/149 (42.28%), Postives = 84/149 (56.38%), Query Frame = -1
Query:  216 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 644
            +E ++ +  K     + GL  I C GE+LE  EAG  +E V AQ  A    +S    S++V+AYEP+WAIGTGK AT   AQ +   +R  + A+    +A   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  104 HETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 63/149 (42.28%), Postives = 84/149 (56.38%), Query Frame = -1
Query:  216 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 644
            +E ++ +  K     + GL  I C GE+LE  EAG  +E V AQ  A    +S    S++V+AYEP+WAIGTGK AT   AQ +   +R  + A+    +A   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:  104 HETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_CLONN (Triosephosphate isomerase OS=Clostridium novyi (strain NT) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = -1
Query:  240 KVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 617
            K+  A    L  I C+GETLE+REA  T EV+A Q K     ++    +  V+AYEP+WAIGTGK AT  QA+E    +RK +      E A   RI YGGSV  A  KE  A+P++DG L+GGASLK
Sbjct:  111 KMKKAFEHNLTPILCIGETLEEREADVTEEVLAKQIKLDLAGLTEAQIAETVIAYEPIWAIGTGKTATSDQAEETIAFVRKTVAGMFGAEAAEKMRIQYGGSVKPATIKEQMAKPNIDGGLIGGASLK 238          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPN (Triosephosphate isomerase OS=Chlamydia pneumoniae GN=tpiA PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = -1
Query:  213 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 641
            E + F+  KV      GL  + CVGE+LE RE G   +V+  Q     +++ + S  ++AYEPVWAIGTGKVA  +  Q++H   R+ +    S   A    I+YGGSV   N +      DVDG LVGGASL+ + F ++ K+
Sbjct:  108 ESDAFIASKVKSVAQAGLVPVLCVGESLEVREEGKAHQVIKKQLLLGLEQMDNGSEFLIAYEPVWAIGTGKVAEASDVQDIHMFCREVVAERFSEATAEEISILYGGSVKVDNAQRFGQCSDVDGLLVGGASLEGQSFFEVAKN 251          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_BRAJA (Triosephosphate isomerase OS=Bradyrhizobium japonicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = -1
Query:  216 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 641
            E +  V  K   A   G+  I C+GET  QR+AG T++++  Q        S+ +N+V+AYEPVWAIGTG   T    +++H  +R++L +  S +  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:  107 EGDALVRQKAEAAWRAGVTAIVCIGETQAQRDAGQTLDILRGQLDGSLPDGSTAANLVVAYEPVWAIGTGLTPTVQDVEQIHGFIREFLTSRFSVD-GAKMRILYGGSVKPSNAAELMAVKNVNGALVGGASLKAADFLAIAK 248          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.075e-22
Identity = 62/147 (42.18%), Postives = 87/147 (59.18%), Query Frame = -1
Query:  213 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 644
            +E +E +  KV   L   ++ I C+GETLE+ EA  T  V+  Q +     + S    ++++AYEPVWAIGTGK A+   AQ+    +R  L   +S  IA    I+YGGSV   N  EL AQ D++G LVGGASL P +FI +I++
Sbjct:  105 HESDELINQKVKTLLENKMRPILCIGETLEEYEANKTKAVLKDQLEKDLKGIDSSLLKDLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGSVTPDNVSELLAQKDINGALVGGASLDPHKFIQLIEA 251          
The following BLAST results are available for this feature:
BLAST of DC887687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BIFAA1.829e-2241.86Triosephosphate isomerase OS=Bifidobacterium adole... [more]
TPIS_MYCMO2.389e-2244.44Triosephosphate isomerase OS=Mycoplasma mobile GN=... [more]
TPIS_SYNJA3.120e-2245.07Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_STRA53.120e-2242.28Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA33.120e-2242.28Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA13.120e-2242.28Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_CLONN3.120e-2247.66Triosephosphate isomerase OS=Clostridium novyi (st... [more]
TPIS_CHLPN3.120e-2239.58Triosephosphate isomerase OS=Chlamydia pneumoniae ... [more]
TPIS_BRAJA3.120e-2241.96Triosephosphate isomerase OS=Bradyrhizobium japoni... [more]
TPIS_MYCGA4.075e-2242.18Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887687 EIC Citrus sinensis cDNA clone EIC0735 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887687 ID=DC887687; Name=DC887687; organism=Citrus sinensis; type=EST; length=644bp
GGTAAACACTACATAAGACTTATTCAACTCCAGCACTTAGGAAACAAAGA
TAATTAAAAAAGTTTAAAAAAAGGTTTCAGTTGGTCGCGCTTATCAAAAA
CAAAAGTAATTCTGAAATTATACCAAACGTATTCTATATATCCACAAACA
GTAAATACTTCATCAGCAAACTGCGCTTGAAATAAAGCTCAAGAATTTTA
CTTCAGCTCAGCAGATTTGATGATGTCAATGAACTCCGGCTTCAACGAAG
CACCACCAACCAAAAATCCGTCAACATCAGGCTGTGCAGCCAATTCCTTG
CAGTTTGCACCATTTACGGATCCTCCGTAGATGATCCGTGTTGCTGCAGC
AATTTCAGGACTGGTGTTTGCAAGAAGCCATTTCCTCAGTTCAAAATGTA
CTTCTTGAGCCTGCGCTGGAGTGGCAACCTTCCCAGTTCCAATAGCCCAC
ACAGGTTCATAGGCCAAAACAATGTTTGACCAGCTTGAGACTCGATCTGC
GATTGCTTTAGTTTGTGCAGCAACAACTTCCATAGTAGATCCTGCTTCAC
GCTGCTCAAGTGTCTCACCAACACAAGCAATCACCTTCAAACCTTGAGAA
AGTGCATATGCAACCTTATCCCCAACAAACTCATTTAATTCATT
back to top