DC887687

Overview
NameDC887687
Unique NameDC887687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.075e-22
Identity = 60/143 (41.96%), Postives = 84/143 (58.74%), Query Frame = -1
Query:  216 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 641
            E +  V  K       GL  I CVGET +QR+AG T++++  Q      + S+ +N+ +AYEPVWAIGTG   T    +++H  +R  L+   + E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:  108 ESDVVVHQKTEAVWRAGLVAIVCVGETQQQRDAGQTLDILRGQLNLSLPQGSTAANLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGE-GARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_METFK (Triosephosphate isomerase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.322e-22
Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  243 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNI---VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 641
            E N  + +K A A   G+  I CVGETL++RE+G     +A Q  A+   VS  + +   V+AYEPVWAIGT + ATP QA+  H  +R+ + A   P  A + RIIYGGSVN  N  +L + PD+DG L+G  SL
Sbjct:  104 ESNANIAEKFAIAKHYGITPIFCVGETLQERESGVMEYAIANQLDAVLS-VSGGALLDQAVIAYEPVWAIGTNRTATPEQARAAHSFIRERIAA-MHPGAAESVRIIYGGSVNPRNAAQLLSMPDIDGGLIGRCSL 237          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.322e-22
Identity = 65/147 (44.22%), Postives = 84/147 (57.14%), Query Frame = -1
Query:  219 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL---LANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 641
            EL   +  K   ALS G  +I C+GET ++REAG    V+  Q +     + S   S +V+AYEPVWAIGTGKVA+       H  +RK L   + NTS  I    RI+YGGSVN  N   +    +V+G LVGGASL+ E F+ II
Sbjct:  104 ELPTLIEQKTKLALSYGFSIILCIGETAQEREAGLVNSVLEQQLRTSLTDIPSKAISQLVIAYEPVWAIGTGKVASQQDIITAHTLIRKILHNMIGNTSQNI----RILYGGSVNSENASSILELDNVNGLLVGGASLQAESFMKII 246          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBM (Triosephosphate isomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.322e-22
Identity = 61/139 (43.88%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  234 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 644
            NE +E V  KV  A    L  I C GE+LEQRE   T +V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  + +    ++A+  RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:  102 NETDETVNKKVKKAFEHNLIPIVCCGESLEQREGNVTEKVLEGQIKVDLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKSMYGEDVASKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_FINM2 (Triosephosphate isomerase OS=Finegoldia magna (strain ATCC 29328) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.951e-22
Identity = 59/139 (42.45%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  234 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 641
            E +E +  K+A AL   +K I C GE LEQRE+    EVV +Q +     ++     S +V+AYEP+WAIGTGK A+   AQ +   +R  L    S ++A + RI YGGSV   N  ++ ++ D+DG LVGGASL+ E
Sbjct:  103 EDDELLNKKIASALKHDIKPILCCGENLEQRESNRHEEVVESQIRLDLKGINEKDIMSKLVIAYEPIWAIGTGKTASSDDAQSMCKFIRNLLSKMYSKDLADSVRIQYGGSVKPENILDIMSKEDIDGALVGGASLEAE 241          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.951e-22
Identity = 62/139 (44.60%), Postives = 77/139 (55.40%), Query Frame = -1
Query:  234 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 644
            NE +E +  K+  A    +  I C GE+L +RE G T EV+  Q K A+ D R      IV+AYEP+WAIGTGK AT  QA +    +R  +        A   RI YGGSV  A  K    QP +DG LVGGASLKP+
Sbjct:  102 NEKDETINKKIKKAFEHDIIPIVCCGESLLERENGITEEVLGRQIKLALKDLRKEQVEKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGSVKPATIKAQMEQPHIDGALVGGASLKPQ 240          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFT (Triosephosphate isomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = -1
Query:  243 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 644
            +E +E V  K A ALS GL+ I CVGE+L QREAG     +A Q   +   V     +  ++AYEPVWAIGTG+ A P+Q Q +H  +R   +A     I  +  I+YGG +   N  EL +Q DVDG L+GGASL
Sbjct:  102 HEDSELVARKFAAALSAGLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHADPSQVQAMHAFIR-GEIARQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASL 236          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFM (Triosephosphate isomerase OS=Xylella fastidiosa (strain M12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = -1
Query:  243 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 644
            +E +E V  K A ALS GL+ I CVGE+L QREAG     +A Q   +   V     +  ++AYEPVWAIGTG+ A P+Q Q +H  +R   +A     I  +  I+YGG +   N  EL +Q DVDG L+GGASL
Sbjct:  102 HEDSELVARKFAAALSAGLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHADPSQVQAMHAFIR-GEIARQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASL 236          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFA (Triosephosphate isomerase OS=Xylella fastidiosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = -1
Query:  243 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 644
            +E +E V  K A ALS GL+ I CVGE+L QREAG     +A Q   +   V     +  ++AYEPVWAIGTG+ A P+Q Q +H  +R   +A     I  +  I+YGG +   N  EL +Q DVDG L+GGASL
Sbjct:  102 HEDSELVARKFAAALSAGLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHADPSQVQAMHAFIR-GEIARQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASL 236          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_XYLF2 (Triosephosphate isomerase OS=Xylella fastidiosa (strain M23) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = -1
Query:  243 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 644
            +E +E V  K A ALS GL+ I CVGE+L QREAG     +A Q   +   V     +  ++AYEPVWAIGTG+ A P+Q Q +H  +R   +A     I  +  I+YGG +   N  EL +Q DVDG L+GGASL
Sbjct:  102 HEDSELVARKFAAALSAGLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHADPSQVQAMHAFIR-GEIARQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASL 236          
The following BLAST results are available for this feature:
BLAST of DC887687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BRASB4.075e-2241.96Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_METFK5.322e-2244.85Triosephosphate isomerase OS=Methylobacillus flage... [more]
TPIS_LAWIP5.322e-2244.22Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPIS_CLOBM5.322e-2243.88Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_FINM26.951e-2242.45Triosephosphate isomerase OS=Finegoldia magna (str... [more]
TPIS_CLOK56.951e-2244.60Triosephosphate isomerase OS=Clostridium kluyveri ... [more]
TPIS_XYLFT1.186e-2144.85Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]
TPIS_XYLFM1.186e-2144.85Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]
TPIS_XYLFA1.186e-2144.85Triosephosphate isomerase OS=Xylella fastidiosa GN... [more]
TPIS_XYLF21.186e-2144.85Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]

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Properties
Property NameValue
Genbank descriptionDC887687 EIC Citrus sinensis cDNA clone EIC0735 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887687 ID=DC887687; Name=DC887687; organism=Citrus sinensis; type=EST; length=644bp
GGTAAACACTACATAAGACTTATTCAACTCCAGCACTTAGGAAACAAAGA
TAATTAAAAAAGTTTAAAAAAAGGTTTCAGTTGGTCGCGCTTATCAAAAA
CAAAAGTAATTCTGAAATTATACCAAACGTATTCTATATATCCACAAACA
GTAAATACTTCATCAGCAAACTGCGCTTGAAATAAAGCTCAAGAATTTTA
CTTCAGCTCAGCAGATTTGATGATGTCAATGAACTCCGGCTTCAACGAAG
CACCACCAACCAAAAATCCGTCAACATCAGGCTGTGCAGCCAATTCCTTG
CAGTTTGCACCATTTACGGATCCTCCGTAGATGATCCGTGTTGCTGCAGC
AATTTCAGGACTGGTGTTTGCAAGAAGCCATTTCCTCAGTTCAAAATGTA
CTTCTTGAGCCTGCGCTGGAGTGGCAACCTTCCCAGTTCCAATAGCCCAC
ACAGGTTCATAGGCCAAAACAATGTTTGACCAGCTTGAGACTCGATCTGC
GATTGCTTTAGTTTGTGCAGCAACAACTTCCATAGTAGATCCTGCTTCAC
GCTGCTCAAGTGTCTCACCAACACAAGCAATCACCTTCAAACCTTGAGAA
AGTGCATATGCAACCTTATCCCCAACAAACTCATTTAATTCATT
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