DC887687

Overview
NameDC887687
Unique NameDC887687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MORSP (Triosephosphate isomerase OS=Moraxella sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.505e-21
Identity = 59/152 (38.82%), Postives = 88/152 (57.89%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW--------SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 641
            E N+ +  K+ +ALSQ L V+ C+GE+ EQ +   T+ V+  Q   I + ++          + +++AYEPVWAIGTGKV T A+    H  +++  LA  +  ++  T ++YGGSVN  N    AA P +DG LVGGASLK +    I +A
Sbjct:  114 ESNDALLQKMIHALSQDLGVVFCIGESQEQYDTKQTLTVIDNQLVVIKEFITQQPELIDALPTRLIIAYEPVWAIGTGKVPTVAEVSATHKHIKQ-TLAGFADSLSNMT-VLYGGSVNADNANSFAADPMIDGALVGGASLKADSFLTIATA 263          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 63/152 (41.45%), Postives = 85/152 (55.92%), Query Frame = -1
Query:  216 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI-----ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 644
            +E +E +  K     + G+  I C GE+LE  EAG   E V AQ  A      A++V+S    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:  104 HETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAS---TVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPE (Triosephosphate isomerase OS=Mycoplasma penetrans GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.685e-21
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = -1
Query:  216 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIK 644
            NE +E V  K    +   ++ + CVGETLE+ EA  + +VV  QTK     VS     N+V+AYEPVWAIGTGKV T  +  ++  ++R  L    S +   +  ++YGGSVN  N +E   Q +++G LVG   LK E F+ +I+
Sbjct:  101 NETDETVNLKTISLVENNMQAVVCVGETLEEYEANKSFDVVWNQTKKALANVSEAQLKNVVIAYEPVWAIGTGKVPTGKEVDDLIQKVRDELSKLYSKQAVESLVVLYGGSVNDKNAEEFFKQKNINGALVGSFCLKAENFVKLIE 246          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.685e-21
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  219 VGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 626
            V  K   A+   +  + CVGETLE+ EA  T +V+  Q K     V   S +++AYEP+WAIGTGK ATP QAQ+V   +RK    N +        I+YGGSV+  N ++L  Q D++G LVGGASLK + FI ++
Sbjct:  112 VNAKTQQAIKNNIIPVVCVGETLEEYEAQKTSQVIEYQLKNSLKDVDL-SKVIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGSVSQENIEQLLNQADINGALVGGASLKVDSFIKLL 239          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH7 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.685e-21
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = -1
Query:  234 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 641
            E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++             T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  107 EKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGMIKE--------NFGKDTTVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_SYNY3 (Triosephosphate isomerase OS=Synechocystis sp. (strain PCC 6803) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = -1
Query:  234 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 641
            E +E    +V  A   GL  I CVGE+  QR+AG T +V+  Q K     V   SN+V+AYEP+WAIGTG      +A  V   +R+ L   T+ ++     I YGGSVN  N  E+ AQP++DG LVGGASL+P+
Sbjct:  105 ETDETANLRVLAAQKAGLIPILCVGESKAQRDAGETEQVIVDQVKKGLVNVDQ-SNLVIAYEPIWAIGTGDTCAATEANRVIGLIREQL---TNSQVT----IQYGGSVNANNVDEIMAQPEIDGALVGGASLEPQ 232          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  234 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 641
            E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++    NT         +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  107 EKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKNTM--------VIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  234 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 641
            E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++    NT         +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  107 EKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKNTM--------VIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  234 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 641
            E +E + +K+  A    L  + CVGE+L + EAG T +V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT A A++V   +++    NT         +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  107 EKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKNTM--------VIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIEC (Triosephosphate isomerase 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = -1
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 641
            E +  V  K   A +  L  I C+GET ++R AG  ++V+  Q  A     ++  N V+AYEP+WAIGTG   T    ++ H  +R  L++    E     R++YGGSV  AN  EL    +VDG L+GGASLK  +F+ I ++ E
Sbjct:  108 ETDHLVRAKAEAAFAAELTAIICIGETADERRAGQELDVIKRQLSASVPDAATAENTVIAYEPIWAIGTGVTPTSGDVEKAHAFMRAELVSRFGDE-GRKMRLLYGGSVKPANAGELLGIANVDGALIGGASLKAADFLAIYRAYE 252          
The following BLAST results are available for this feature:
BLAST of DC887687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MORSP4.505e-2138.82Triosephosphate isomerase OS=Moraxella sp. GN=tpiA... [more]
TPIS_STRGC5.884e-2141.45Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_MYCPE7.685e-2139.73Triosephosphate isomerase OS=Mycoplasma penetrans ... [more]
TPIS_MYCHR7.685e-2143.80Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_MYCH77.685e-2142.65Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_SYNY31.004e-2044.12Triosephosphate isomerase OS=Synechocystis sp. (st... [more]
TPIS_MYCHY1.004e-2043.38Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ1.004e-2043.38Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH21.004e-2043.38Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS1_RHIEC1.004e-2038.36Triosephosphate isomerase 1 OS=Rhizobium etli (str... [more]

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Properties
Property NameValue
Genbank descriptionDC887687 EIC Citrus sinensis cDNA clone EIC0735 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887687 ID=DC887687; Name=DC887687; organism=Citrus sinensis; type=EST; length=644bp
GGTAAACACTACATAAGACTTATTCAACTCCAGCACTTAGGAAACAAAGA
TAATTAAAAAAGTTTAAAAAAAGGTTTCAGTTGGTCGCGCTTATCAAAAA
CAAAAGTAATTCTGAAATTATACCAAACGTATTCTATATATCCACAAACA
GTAAATACTTCATCAGCAAACTGCGCTTGAAATAAAGCTCAAGAATTTTA
CTTCAGCTCAGCAGATTTGATGATGTCAATGAACTCCGGCTTCAACGAAG
CACCACCAACCAAAAATCCGTCAACATCAGGCTGTGCAGCCAATTCCTTG
CAGTTTGCACCATTTACGGATCCTCCGTAGATGATCCGTGTTGCTGCAGC
AATTTCAGGACTGGTGTTTGCAAGAAGCCATTTCCTCAGTTCAAAATGTA
CTTCTTGAGCCTGCGCTGGAGTGGCAACCTTCCCAGTTCCAATAGCCCAC
ACAGGTTCATAGGCCAAAACAATGTTTGACCAGCTTGAGACTCGATCTGC
GATTGCTTTAGTTTGTGCAGCAACAACTTCCATAGTAGATCCTGCTTCAC
GCTGCTCAAGTGTCTCACCAACACAAGCAATCACCTTCAAACCTTGAGAA
AGTGCATATGCAACCTTATCCCCAACAAACTCATTTAATTCATT
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