DC887687

Overview
NameDC887687
Unique NameDC887687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.945e-40
Identity = 77/144 (53.47%), Postives = 105/144 (72.92%), Query Frame = -1
Query:  213 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 644
            NE +E V +K A+AL +G+ VI C+GETL++++AG T++VV  Q   + ++V  W+N+V+AYEPVWAIGTG  AT   AQ++H  +R +L   TS ++A A RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  103 NEDDEQVAEKTAFALERGVSVILCIGETLDEKKAGVTLDVVKRQLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.318e-40
Identity = 78/122 (63.93%), Postives = 94/122 (77.05%), Query Frame = -1
Query:  276 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD 641
            E +E + +KVA+AL +GLKVIAC+GETL++REAG T  V   QTKAIA +V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++ A RI YGGSV  ANC+ELA +PD
Sbjct:   85 ETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.660e-40
Identity = 75/144 (52.08%), Postives = 103/144 (71.53%), Query Frame = -1
Query:  213 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 644
            NE +E V +K  +AL  G+KVI C+GETLE+++   T++VV  Q +A+ ++V  W+N+V+AYEPVWAIGTG  AT   AQ++H  +R++L    S ++A + RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  103 NETDEIVAEKTKFALDSGVKVILCIGETLEEKQQNITLQVVQRQLQAVLEKVQDWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.660e-40
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = -1
Query:  270 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVD 641
            E ++ V +KVA+AL  GLKVIAC+GETLE+REAG T EVV  QTKA+   + ++W+N+VLAYEPVWAIGTGK A+P QAQ+VH  LR WL +N SP++AA+ RI YGGSV  AN KEL+A PD+D
Sbjct:   91 EKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAKELSAFPDID 215          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.668e-39
Identity = 77/144 (53.47%), Postives = 100/144 (69.44%), Query Frame = -1
Query:  213 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 644
            +E ++ V +K  +AL QGL VI C+GETLE+++AG T++VV  Q  A+   V  W+N+V+AYEPVWAIGTG  AT   AQ++H  +R +L      + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  103 HEDDKIVAEKTKFALDQGLGVILCIGETLEEKKAGVTLKVVERQLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.378e-38
Identity = 76/143 (53.15%), Postives = 100/143 (69.93%), Query Frame = -1
Query:  213 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 641
            E +E++ DK  YAL  GL VI C+GET+++++AG T++VV +Q   +  ++  WSN+V+AYEPVWAIGTG  AT   AQ++H E+R +L      + A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  104 ESSEWIADKTKYALDNGLDVILCIGETIDEKKAGKTLDVVRSQLDPVIAKIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.918e-38
Identity = 79/145 (54.48%), Postives = 98/145 (67.59%), Query Frame = -1
Query:  219 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 641
            E NE    K   AL +G+ VI C GETL++R+A +TMEV  AQ +A+   +      W N+V+AYEPVW+IGTG VATP QA+EVH  LRKW       E A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF  +I
Sbjct:  105 ETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFTTMI 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.541e-37
Identity = 77/145 (53.10%), Postives = 98/145 (67.59%), Query Frame = -1
Query:  210 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 644
            +E +E V +K+  +L   LK + C GE+LEQRE   T+EV+  Q KA  D + ++ N++LAYEP+WAIGTGK ATP QAQ VH E+RK +      + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:  103 HETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.541e-37
Identity = 77/145 (53.10%), Postives = 98/145 (67.59%), Query Frame = -1
Query:  210 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 644
            +E +E V +K+  +L   LK + C GE+LEQRE   T+EV+  Q KA  D + ++ N++LAYEP+WAIGTGK ATP QAQ VH E+RK +      + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:  103 HETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.857e-37
Identity = 78/145 (53.79%), Postives = 98/145 (67.59%), Query Frame = -1
Query:  219 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 641
            E +E    K   AL +G+ VI CVGETL++R+A  TMEV  AQ +A+   +      W  +V+AYEPVW+IGTG VATP QA+EVH  LRKW       E A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF+ +I
Sbjct:  105 ETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFMTMI 249          
The following BLAST results are available for this feature:
BLAST of DC887687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ASHGO1.945e-4053.47Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_ANOME3.318e-4063.93Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_KLULA5.660e-4052.08Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_HELVI5.660e-4063.20Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_CANGA3.668e-3953.47Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_YARLI2.378e-3853.15Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPI2_GIALA6.918e-3854.48Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_PLAFA1.541e-3753.10Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF71.541e-3753.10Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPI1_GIALA5.857e-3753.79Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionDC887687 EIC Citrus sinensis cDNA clone EIC0735 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887687 ID=DC887687; Name=DC887687; organism=Citrus sinensis; type=EST; length=644bp
GGTAAACACTACATAAGACTTATTCAACTCCAGCACTTAGGAAACAAAGA
TAATTAAAAAAGTTTAAAAAAAGGTTTCAGTTGGTCGCGCTTATCAAAAA
CAAAAGTAATTCTGAAATTATACCAAACGTATTCTATATATCCACAAACA
GTAAATACTTCATCAGCAAACTGCGCTTGAAATAAAGCTCAAGAATTTTA
CTTCAGCTCAGCAGATTTGATGATGTCAATGAACTCCGGCTTCAACGAAG
CACCACCAACCAAAAATCCGTCAACATCAGGCTGTGCAGCCAATTCCTTG
CAGTTTGCACCATTTACGGATCCTCCGTAGATGATCCGTGTTGCTGCAGC
AATTTCAGGACTGGTGTTTGCAAGAAGCCATTTCCTCAGTTCAAAATGTA
CTTCTTGAGCCTGCGCTGGAGTGGCAACCTTCCCAGTTCCAATAGCCCAC
ACAGGTTCATAGGCCAAAACAATGTTTGACCAGCTTGAGACTCGATCTGC
GATTGCTTTAGTTTGTGCAGCAACAACTTCCATAGTAGATCCTGCTTCAC
GCTGCTCAAGTGTCTCACCAACACAAGCAATCACCTTCAAACCTTGAGAA
AGTGCATATGCAACCTTATCCCCAACAAACTCATTTAATTCATT
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