DC887687

Overview
NameDC887687
Unique NameDC887687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 75/147 (51.02%), Postives = 100/147 (68.03%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:  104 ETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.651e-31
Identity = 75/149 (50.34%), Postives = 95/149 (63.76%), Query Frame = -1
Query:  204 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 641
            E NE V  +   A+   LK I CVGETLEQRE G T+ V+ AQ   + +   V S  + V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L+A  +PE+A A +IIYGGSV   N  EL A PD+DG L+GGASL    F+ I  S  +
Sbjct:  103 ESNELVASRYEQAIQGHLKPILCVGETLEQREQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGSVKPENSAELFAMPDIDGGLIGGASLDARAFLSICHSVSV 250          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.156e-31
Identity = 74/147 (50.34%), Postives = 100/147 (68.03%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V ++++ V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:  104 ETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.156e-31
Identity = 74/147 (50.34%), Postives = 100/147 (68.03%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E +  K A A ++GLK + C+GETLE+REAG T+EVV  Q  +I +   V ++++ V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:  104 ETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.156e-31
Identity = 76/139 (54.68%), Postives = 94/139 (67.63%), Query Frame = -1
Query:  210 KVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 617
            K A A + GLK + CVGETLEQREAG T+EVV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  S E+A   R++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:  112 KFAAAQACGLKPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRAQLAAENS-EVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.272e-31
Identity = 74/145 (51.03%), Postives = 97/145 (66.90%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E N  V  +V  AL++GL VI CVGETL +RE+G T ++V+AQ +     VS  SN+V+AYEPVWAIGTGK AT AQA+EVH  +R  +        A A RI YGGSV  +N  EL A P++DG L+GGASL   +F+ I+++A
Sbjct:  105 ETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNAVELFAMPNIDGGLIGGASLNAADFVAIVQAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPW (Triosephosphate isomerase OS=Pseudomonas putida (strain W619) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.192e-31
Identity = 72/147 (48.98%), Postives = 97/147 (65.99%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E  E +  K A A   GL  + C+GETLE+REAG T+EVV  Q  ++ D   +++++N V+AYEPVWAIGTG  A+P QAQ+VH  +RK L A  + E+A   +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:  104 ESEEVLNRKFAAAQKSGLTPVLCIGETLEEREAGKTLEVVGRQLSSVIDAFGIAAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLAAKDA-EVAQNVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.192e-31
Identity = 73/148 (49.32%), Postives = 102/148 (68.92%), Query Frame = -1
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 641
            E +  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D V  ++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++ LA   P+IA + R++YGGSV   N   L AQ D+DG L+GGASL  + FI I ++AE
Sbjct:  101 ETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQF-LAKDDPDIAQSLRLLYGGSVKADNAALLFAQSDIDGGLIGGASLTADSFIAICQAAE 247          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPF (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.070e-30
Identity = 76/147 (51.70%), Postives = 97/147 (65.99%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +  +  K A A + GL  + CVGETLEQREAG T+EVV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R+ L A  S E+A   R++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:  104 ERDGMLNRKFAAAQACGLIPVLCVGETLEQREAGKTLEVVGRQLGSIIEELGVGAFANAVIAYEPVWAIGTGLTATPQQAQDVHKAIREQLAAENS-EVARGVRLLYGGSVKAANAVELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 77/147 (52.38%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E V  K A A + GLK + C+GETLE+REAG T+EVVA Q   + D   V ++ + V+AYEPVWAIG+G  ATP QAQEVH  +R   LA +   IA   R++YGGSV   N  EL A  D+DG LVGGASLK  EF  I ++A
Sbjct:  104 ETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRD-QLARSDRRIAEGVRLLYGGSVKADNAAELFAMADIDGGLVGGASLKADEFGAICRAA 249          
The following BLAST results are available for this feature:
BLAST of DC887687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEPG5.673e-3251.02Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_METCA1.651e-3150.34Triosephosphate isomerase OS=Methylococcus capsula... [more]
TPIS_PSEPK2.156e-3150.34Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEP12.156e-3150.34Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEF52.156e-3154.68Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_CHLCH6.272e-3151.03Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_PSEPW8.192e-3148.98Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_ALCBS8.192e-3149.32Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_PSEPF1.070e-3051.70Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_PSEU51.825e-3052.38Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]

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Properties
Property NameValue
Genbank descriptionDC887687 EIC Citrus sinensis cDNA clone EIC0735 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887687 ID=DC887687; Name=DC887687; organism=Citrus sinensis; type=EST; length=644bp
GGTAAACACTACATAAGACTTATTCAACTCCAGCACTTAGGAAACAAAGA
TAATTAAAAAAGTTTAAAAAAAGGTTTCAGTTGGTCGCGCTTATCAAAAA
CAAAAGTAATTCTGAAATTATACCAAACGTATTCTATATATCCACAAACA
GTAAATACTTCATCAGCAAACTGCGCTTGAAATAAAGCTCAAGAATTTTA
CTTCAGCTCAGCAGATTTGATGATGTCAATGAACTCCGGCTTCAACGAAG
CACCACCAACCAAAAATCCGTCAACATCAGGCTGTGCAGCCAATTCCTTG
CAGTTTGCACCATTTACGGATCCTCCGTAGATGATCCGTGTTGCTGCAGC
AATTTCAGGACTGGTGTTTGCAAGAAGCCATTTCCTCAGTTCAAAATGTA
CTTCTTGAGCCTGCGCTGGAGTGGCAACCTTCCCAGTTCCAATAGCCCAC
ACAGGTTCATAGGCCAAAACAATGTTTGACCAGCTTGAGACTCGATCTGC
GATTGCTTTAGTTTGTGCAGCAACAACTTCCATAGTAGATCCTGCTTCAC
GCTGCTCAAGTGTCTCACCAACACAAGCAATCACCTTCAAACCTTGAGAA
AGTGCATATGCAACCTTATCCCCAACAAACTCATTTAATTCATT
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