DC887687

Overview
NameDC887687
Unique NameDC887687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = -1
Query:  213 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 644
            +E +  + +KV  ALS GL  I CVGE LE+REAG   EVVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL ++ DVDG L+GGASL   +F+ II++
Sbjct:  104 HETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEA 250          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = -1
Query:  213 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 644
            +E +  + +KV  ALS GL  I CVGE LE+REAG   EVVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL ++ DVDG L+GGASL   +F+ II++
Sbjct:  104 HETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEA 250          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEE4 (Triosephosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.113e-30
Identity = 71/147 (48.30%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E +  K A A   GL  + C+GETL +REAG T++VV  Q  ++ D   + +++N V+AYEPVWAIGTG  A+P QAQ+VH  +RK L A    E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:  104 ESDEVLNQKFAAAQKSGLTPVLCIGETLAEREAGETLKVVGRQLSSVIDAFGIKAFANAVIAYEPVWAIGTGLTASPQQAQDVHAAIRKQLAA-MDAEVAANVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAE (Triosephosphate isomerase OS=Pseudomonas aeruginosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30
Identity = 76/147 (51.70%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E V  K A A S GL  + CVGET  +REAG T+EVVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASL   EF  I ++A
Sbjct:  104 ESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAB (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30
Identity = 76/147 (51.70%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E V  K A A S GL  + CVGET  +REAG T+EVVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASL   EF  I ++A
Sbjct:  104 ESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA8 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30
Identity = 76/147 (51.70%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E V  K A A S GL  + CVGET  +REAG T+EVVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASL   EF  I ++A
Sbjct:  104 ESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA7 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30
Identity = 76/147 (51.70%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +E V  K A A S GL  + CVGET  +REAG T+EVVA Q  ++ D   V +++  V+AYEPVWAIGTG  A+PAQAQEVH  +R  L A  + E+A   R++YGGSV  A+  EL   PD+DG LVGGASL   EF  I ++A
Sbjct:  104 ESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAENA-EVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAA 249          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_RHOFD (Triosephosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 79/146 (54.11%), Postives = 95/146 (65.07%), Query Frame = -1
Query:  210 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 641
            E +  V  K   AL+ G+  I CVGETL +REAG T EVV  Q  A+        S +V+AYEPVWAIGTGK A+  QAQ+VH  LR+ L A +    A   +IIYGGS+N AN  EL AQPD+DG LVGGASLK P+F+ II SA
Sbjct:  103 ETDALVAAKAQRALACGITPIVCVGETLAEREAGRTEEVVKRQLAAVIHANGHCISEVVVAYEPVWAIGTGKTASIEQAQQVHSVLRQQLQAASIQ--ADRIQIIYGGSMNAANAAELLAQPDIDGGLVGGASLKVPDFLSIIASA 246          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 75/148 (50.68%), Postives = 93/148 (62.84%), Query Frame = -1
Query:  207 ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 641
            E +E +  K A    QGL  + C+GET  + EAG T EV A Q  A+      S++  +V+AYEPVWAIGTGK ATPAQAQ VH  +R  + A    ++A    I YGGSVN AN  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:  104 ESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of DC887687 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = -1
Query:  240 NELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 644
            +E  E + +KV  AL+  LK I C+GE LE+REA    EVVAAQ  ++       +S I+LAYEPVWAIGTGK AT  QAQE+H  +R  +      E+A  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  104 HETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
The following BLAST results are available for this feature:
BLAST of DC887687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PORGI1.825e-3049.66Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG31.825e-3049.66Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PSEE43.113e-3048.30Triosephosphate isomerase OS=Pseudomonas entomophi... [more]
TPIS_PSEAE4.065e-3051.70Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEAB4.065e-3051.70Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA84.065e-3051.70Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA74.065e-3051.70Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_RHOFD5.310e-3054.11Triosephosphate isomerase OS=Rhodoferax ferrireduc... [more]
TPIS_ENT385.310e-3050.68Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_BACV85.310e-3051.47Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]

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Properties
Property NameValue
Genbank descriptionDC887687 EIC Citrus sinensis cDNA clone EIC0735 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887687 ID=DC887687; Name=DC887687; organism=Citrus sinensis; type=EST; length=644bp
GGTAAACACTACATAAGACTTATTCAACTCCAGCACTTAGGAAACAAAGA
TAATTAAAAAAGTTTAAAAAAAGGTTTCAGTTGGTCGCGCTTATCAAAAA
CAAAAGTAATTCTGAAATTATACCAAACGTATTCTATATATCCACAAACA
GTAAATACTTCATCAGCAAACTGCGCTTGAAATAAAGCTCAAGAATTTTA
CTTCAGCTCAGCAGATTTGATGATGTCAATGAACTCCGGCTTCAACGAAG
CACCACCAACCAAAAATCCGTCAACATCAGGCTGTGCAGCCAATTCCTTG
CAGTTTGCACCATTTACGGATCCTCCGTAGATGATCCGTGTTGCTGCAGC
AATTTCAGGACTGGTGTTTGCAAGAAGCCATTTCCTCAGTTCAAAATGTA
CTTCTTGAGCCTGCGCTGGAGTGGCAACCTTCCCAGTTCCAATAGCCCAC
ACAGGTTCATAGGCCAAAACAATGTTTGACCAGCTTGAGACTCGATCTGC
GATTGCTTTAGTTTGTGCAGCAACAACTTCCATAGTAGATCCTGCTTCAC
GCTGCTCAAGTGTCTCACCAACACAAGCAATCACCTTCAAACCTTGAGAA
AGTGCATATGCAACCTTATCCCCAACAAACTCATTTAATTCATT
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