CN185120
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_YERPA (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11 Identity = 59/230 (25.65%), Postives = 101/230 (43.91%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVGPFNLGNP-GEFTMLELAQVV 657 + GNP F + D+ +E + + D I L A+P+ Y NP++ + + L ++ + R + STSEVYG D + ++T V PI R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + G Q R F + D +E L R++E N+GNP E ++ ELA+++ Sbjct: 353 ISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEML 581
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_YERP3 (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11 Identity = 59/230 (25.65%), Postives = 101/230 (43.91%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVGPFNLGNP-GEFTMLELAQVV 657 + GNP F + D+ +E + + D I L A+P+ Y NP++ + + L ++ + R + STSEVYG D + ++T V PI R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + G Q R F + D +E L R++E N+GNP E ++ ELA+++ Sbjct: 353 ISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGQIINIGNPTNEASIRELAEML 581
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11 Identity = 57/224 (25.45%), Postives = 97/224 (43.30%), Query Frame = 1 Query: 49 PNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVV 657 P F + D+ +E + + D + L A+P+ Y NP++ + + L ++ + R + STSEVYG G +N R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +SD +E L R++E G G N+GNP E ++ ELA+++ Sbjct: 360 PRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDSSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEML 581
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11 Identity = 56/220 (25.45%), Postives = 94/220 (42.73%), Query Frame = 1 Query: 46 NPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNPGEFTMLE 642 +PNF + D+ +E + + D + L A+P+ Y NP++ + + L ++ + R + STSEVYG E + V PI R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R++E GE + N+GNP +E Sbjct: 359 HPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRIIFPSTSEVYGMCTDKFFDEDHSNLIVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENTGNRCDGEII---NIGNPDNEASIE 575
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11 Identity = 60/230 (26.09%), Postives = 102/230 (44.35%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVV 657 + G+P F + D+ +E + + D I L A+P+ Y NP++ + + L ++ R R + STSEVYG D + ++T V PI R Y K+ + + Y G+ + R FN GPR+ I R ++ + + P+ + G Q R F + D +E L R++E G+ G N+GNP E ++ EL +++ Sbjct: 360 IARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEML 588
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11 Identity = 55/225 (24.44%), Postives = 95/225 (42.22%), Query Frame = 1 Query: 46 NPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG----PFNLGNP-GEFTMLELAQVV 657 NPNF + D+ +E + + D I L A+P+ Y NP++ + + L ++ + R + STSEVYG G +N R Y K+ + + Y ++ + R FN GPR+ I R ++ + + P+ + G+Q R F + D +E L R++E N+GNP E ++ ELA+++ Sbjct: 359 NPNFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDSSRLIVGPINK--QRWIYSVSKQLLDRVIWAYGAKENLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDIHDGIEALFRIIENRDGACDGQIINIGNPTNEASIRELAEML 581
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11 Identity = 60/237 (25.32%), Postives = 101/237 (42.62%), Query Frame = 1 Query: 19 KENVMHHF-GNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--------GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVGPFNLGNP-GEFTMLELAQVV 657 K N++ F GN F I+ D+ V+ + + D I L A P+ Y NP+K K + L ++ + R + STSEVYG D G + R Y K+ + + Y + I R FN GP +DD RV + + + P+T+ +G Q R F + D +E L +++ + + N+GNP E+T+++L +++ Sbjct: 348 KNNLVKSFIGNEKFCFIKGDIKQYYNWVKKKIKKCDIILPLIAIARPMQYIKNPLKVFKIDFEENLKIIRYCVKYKKRIIFPSTSEVYGMCKDDYFDEENSNLVTGAIK--NQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPG--LDDFKIAEKQNARVTTQIIFNLINGLPVTIVNNGNQKRCFTDIDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKII 580
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11 Identity = 60/230 (26.09%), Postives = 101/230 (43.91%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVV 657 + G+P F + D+ +E + + D I L A+P+ Y NP++ + + L ++ R R + STSEVYG D + ++T V PI R Y K+ + + Y G+ + R FN GPR+ I R ++ + + P+ + G Q R F + D +E L R++E G+ G N+GNP E ++ EL ++ Sbjct: 359 IARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRNGQCDGQIINIGNPHNEASIRELGDML 587
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_SHISS (Bifunctional polymyxin resistance protein arnA OS=Shigella sonnei (strain Ss046) GN=arnA PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657 + +P+F + D+ +E + + D + L A+P+ Y NP++ + + L ++ + R + STSEVYG G VN R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R++E GE + N+GNP E ++ EL +++ Sbjct: 353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657 + +P+F + D+ +E + + D + L A+P+ Y NP++ + + L ++ + R + STSEVYG G VN R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R++E GE + N+GNP E ++ EL +++ Sbjct: 353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581 The following BLAST results are available for this feature:
BLAST of CN185120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185120 ID=CN185120; Name=CN185120; organism=Citrus sinensis; type=EST; length=660bpback to top |