CN185120

Overview
NameCN185120
Unique NameCN185120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9575 contig Csv1_Contig9575:619..1278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_YERPA (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 59/230 (25.65%), Postives = 101/230 (43.91%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVGPFNLGNP-GEFTMLELAQVV 657
            +    GNP F  +  D+      +E  + + D I  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG  D  +   ++T    V PI   R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   G Q R F  + D +E L R++E           N+GNP  E ++ ELA+++
Sbjct:  353 ISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEML 581          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_YERP3 (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 59/230 (25.65%), Postives = 101/230 (43.91%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVGPFNLGNP-GEFTMLELAQVV 657
            +    GNP F  +  D+      +E  + + D I  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG  D  +   ++T    V PI   R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   G Q R F  + D +E L R++E           N+GNP  E ++ ELA+++
Sbjct:  353 ISRFLGNPAFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGQIINIGNPTNEASIRELAEML 581          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 57/224 (25.45%), Postives = 97/224 (43.30%), Query Frame = 1
Query:   49 PNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVV 657
            P F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G +N    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  +SD +E L R++E   G   G   N+GNP  E ++ ELA+++
Sbjct:  360 PRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDSSNLVVGPINK--QRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEML 581          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 56/220 (25.45%), Postives = 94/220 (42.73%), Query Frame = 1
Query:   46 NPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNPGEFTMLE 642
            +PNF  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG        E +    V PI   R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP     +E
Sbjct:  359 HPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRIIFPSTSEVYGMCTDKFFDEDHSNLIVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENTGNRCDGEII---NIGNPDNEASIE 575          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 60/230 (26.09%), Postives = 102/230 (44.35%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVV 657
            +    G+P F  +  D+      +E  + + D I  L   A+P+ Y  NP++  + +    L ++    R   R +  STSEVYG  D  +   ++T    V PI   R  Y   K+  + +   Y    G+   + R FN  GPR+       I   R ++  +   +   P+ +   G Q R F  + D +E L R++E   G+  G   N+GNP  E ++ EL +++
Sbjct:  360 IARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEML 588          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 55/225 (24.44%), Postives = 95/225 (42.22%), Query Frame = 1
Query:   46 NPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG----PFNLGNP-GEFTMLELAQVV 657
            NPNF  +  D+      +E  + + D I  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G +N    R  Y   K+  + +   Y     ++  + R FN  GPR+       I   R ++  +   +   P+ +   G+Q R F  + D +E L R++E           N+GNP  E ++ ELA+++
Sbjct:  359 NPNFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDSSRLIVGPINK--QRWIYSVSKQLLDRVIWAYGAKENLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDIHDGIEALFRIIENRDGACDGQIINIGNPTNEASIRELAEML 581          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 60/237 (25.32%), Postives = 101/237 (42.62%), Query Frame = 1
Query:   19 KENVMHHF-GNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--------GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVGPFNLGNP-GEFTMLELAQVV 657
            K N++  F GN  F  I+ D+      V+  + + D I  L   A P+ Y  NP+K  K +    L ++    +   R +  STSEVYG    D           G +     R  Y   K+  + +   Y     +   I R FN  GP   +DD         RV +  +   +   P+T+  +G Q R F  + D +E L  +++ +    +    N+GNP  E+T+++L +++
Sbjct:  348 KNNLVKSFIGNEKFCFIKGDIKQYYNWVKKKIKKCDIILPLIAIARPMQYIKNPLKVFKIDFEENLKIIRYCVKYKKRIIFPSTSEVYGMCKDDYFDEENSNLVTGAIK--NQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPG--LDDFKIAEKQNARVTTQIIFNLINGLPVTIVNNGNQKRCFTDIDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKII 580          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 60/230 (26.09%), Postives = 101/230 (43.91%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVV 657
            +    G+P F  +  D+      +E  + + D I  L   A+P+ Y  NP++  + +    L ++    R   R +  STSEVYG  D  +   ++T    V PI   R  Y   K+  + +   Y    G+   + R FN  GPR+       I   R ++  +   +   P+ +   G Q R F  + D +E L R++E   G+  G   N+GNP  E ++ EL  ++
Sbjct:  359 IARFLGDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYGMCDDKEF-DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRNGQCDGQIINIGNPHNEASIRELGDML 587          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_SHISS (Bifunctional polymyxin resistance protein arnA OS=Shigella sonnei (strain Ss046) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581          
The following BLAST results are available for this feature:
BLAST of CN185120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_YERPA3.381e-1125.65Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERP33.381e-1125.65Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP73.381e-1125.45Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ESCF33.381e-1125.45Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT3.381e-1126.09Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE84.415e-1124.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_WIGBR4.415e-1125.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PECCP4.415e-1126.09Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHISS7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIDS7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185120 ID=CN185120; Name=CN185120; organism=Citrus sinensis; type=EST; length=660bp
GAGGTCTTCACGGGAAGGAAAGAAAACGTGATGCACCACTTTGGTAACCC
GAATTTCGAGCTCATCAGACACGACGTCGTCGAGCCTCTCTTGCTTGAAG
TCGACCAGATCTACCATCTCGCTTGTCCCGCATCTCCAGTTCATTACAAA
TTCAACCCCGTCAAGACTATTAAGACGAATGTGGTGGGAACATTGAACAT
GCTTGGATTGGCGAAGAGAGTGGGAGCGAGGTTCTTATTAACGAGTACCA
GTGAAGTATACGGTGACCCTCTTCAGCATCCACAGAAGGAGACTTACTGG
GGCAACGTCAATCCTATCGGTGTCCGAAGTTGTTACGATGAGGGAAAGCG
AACTGCTGAAACGTTGACCATGGACTACCACAGAGGAGCTGGCGTGGAGG
TTAGGATTGCTAGAATTTTCAACACTTATGGACCCCGTATGTGTATCGAT
GATGGTCGCGTTGTCAGTAATTTTGTTGCTCAGGCTTTAAGGAAGGAGCC
TTTGACTGTATATGGAGATGGGAAGCAGACTAGGAGTTTCCAATTTGTTT
CTGATTTGGTGGAGGGTCTGATGCGCCTCATGGAGGGAGAACATGTGGGT
CCTTTTAATCTTGGAAATCCGGGTGAATTTACCATGCTTGAACTTGCTCA
GGTGGTCCAG
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