CN185120

Overview
NameCN185120
Unique NameCN185120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_SHIBS (Bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 4 (strain Sb227) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOUT (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain UTI89 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSM (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSE (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SE11) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLU (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPDNEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLI (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12) GN=arnA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLC (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL6 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6 GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFMNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
[Close]
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECOK1 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O1:K1 / APEC GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
The following BLAST results are available for this feature:
BLAST of CN185120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_SHIBS7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOUT7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSM7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSE7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLU7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLI7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLC7.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL67.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL57.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOK17.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185120 ID=CN185120; Name=CN185120; organism=Citrus sinensis; type=EST; length=660bp
GAGGTCTTCACGGGAAGGAAAGAAAACGTGATGCACCACTTTGGTAACCC
GAATTTCGAGCTCATCAGACACGACGTCGTCGAGCCTCTCTTGCTTGAAG
TCGACCAGATCTACCATCTCGCTTGTCCCGCATCTCCAGTTCATTACAAA
TTCAACCCCGTCAAGACTATTAAGACGAATGTGGTGGGAACATTGAACAT
GCTTGGATTGGCGAAGAGAGTGGGAGCGAGGTTCTTATTAACGAGTACCA
GTGAAGTATACGGTGACCCTCTTCAGCATCCACAGAAGGAGACTTACTGG
GGCAACGTCAATCCTATCGGTGTCCGAAGTTGTTACGATGAGGGAAAGCG
AACTGCTGAAACGTTGACCATGGACTACCACAGAGGAGCTGGCGTGGAGG
TTAGGATTGCTAGAATTTTCAACACTTATGGACCCCGTATGTGTATCGAT
GATGGTCGCGTTGTCAGTAATTTTGTTGCTCAGGCTTTAAGGAAGGAGCC
TTTGACTGTATATGGAGATGGGAAGCAGACTAGGAGTTTCCAATTTGTTT
CTGATTTGGTGGAGGGTCTGATGCGCCTCATGGAGGGAGAACATGTGGGT
CCTTTTAATCTTGGAAATCCGGGTGAATTTACCATGCTTGAACTTGCTCA
GGTGGTCCAG
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