CN185120
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657 + +P+F + D+ +E + + D + L A+P+ Y NP++ + + L ++ + R + STSEVYG G VN R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R++E GE + N+GNP E ++ EL +++ Sbjct: 353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLIDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECO24 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=arnA PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657 + +P+F + D+ +E + + D + L A+P+ Y NP++ + + L ++ + R + STSEVYG G VN R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R++E GE + N+GNP E ++ EL +++ Sbjct: 353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11 Identity = 55/209 (26.32%), Postives = 95/209 (45.45%), Query Frame = 1 Query: 52 NFELIRHDVVEP----LLLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-FNLGNPGEFTMLELAQ 651 N++ I+ D+ + LL E ++I + A+ H + V+ + NV GT ++ A +F+ ST EVYG L E+ +P + Y K AE Y V I R N YGP + +V+ F++ ++G G QTR+F + +D+VE + +++ G +N+G E ++L+LA+ Sbjct: 69 NYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAK 270
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_SHIB3 (Putative bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=arnA PE=5 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11 Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1 Query: 28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657 + +P+F + D+ +E + + D + L A+P+ Y NP++ + + L ++ + R + STSEVYG G VN R Y K+ + + Y G++ + R FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R++E GE + N+GNP E ++ EL +++ Sbjct: 219 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGKML 447
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11 Identity = 58/223 (26.01%), Postives = 102/223 (45.74%), Query Frame = 1 Query: 46 NPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPL-QHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVV 657 +P F + D+ +E + + D + L A+P+ Y NP++ + + L ++ + R + STSEVYG ++ ++T V PI R Y K+ + + Y ++ + R FN GPR+ I R ++ + + P+ + GKQ R F +SD +E L R++E G G N+GNP E ++ ELA+++ Sbjct: 359 SPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEML 581 The following BLAST results are available for this feature:
BLAST of CN185120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185120 ID=CN185120; Name=CN185120; organism=Citrus sinensis; type=EST; length=660bpback to top |