CN185120

Overview
NameCN185120
Unique NameCN185120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9575 contig Csv1_Contig9575:619..1278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLIDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_ECO24 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  353 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGEML 581          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 55/209 (26.32%), Postives = 95/209 (45.45%), Query Frame = 1
Query:   52 NFELIRHDVVEP----LLLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-FNLGNPGEFTMLELAQ 651
            N++ I+ D+ +     LL E ++I  +   A+  H   + V+  +    NV GT  ++  A      +F+  ST EVYG  L     E+     +P    + Y   K  AE     Y       V I R  N YGP    +  +V+  F++         ++G G QTR+F + +D+VE  + +++    G  +N+G   E ++L+LA+
Sbjct:   69 NYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFIYVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAK 270          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_SHIB3 (Putative bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=arnA PE=5 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 56/234 (23.93%), Postives = 99/234 (42.31%), Query Frame = 1
Query:   28 VMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-------GEHVGPFNLGNP-GEFTMLELAQVV 657
            +     +P+F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG                G VN    R  Y   K+  + +   Y    G++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  + D +E L R++E       GE +   N+GNP  E ++ EL +++
Sbjct:  219 ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK--PRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEII---NIGNPENEASIEELGKML 447          
BLAST of CN185120 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 58/223 (26.01%), Postives = 102/223 (45.74%), Query Frame = 1
Query:   46 NPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPL-QHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVV 657
            +P F  +  D+      +E  + + D +  L   A+P+ Y  NP++  + +    L ++    +   R +  STSEVYG    ++  ++T    V PI   R  Y   K+  + +   Y     ++  + R FN  GPR+       I   R ++  +   +   P+ +   GKQ R F  +SD +E L R++E   G   G   N+GNP  E ++ ELA+++
Sbjct:  359 SPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEML 581          
The following BLAST results are available for this feature:
BLAST of CN185120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_ECO277.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO247.531e-1123.93Bifunctional polymyxin resistance protein arnA OS=... [more]
TGDS_BOVIN9.836e-1126.32dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
ARNA_SHIB39.836e-1123.93Putative bifunctional polymyxin resistance protein... [more]
ARNA_KLEP39.836e-1126.01Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185120 ID=CN185120; Name=CN185120; organism=Citrus sinensis; type=EST; length=660bp
GAGGTCTTCACGGGAAGGAAAGAAAACGTGATGCACCACTTTGGTAACCC
GAATTTCGAGCTCATCAGACACGACGTCGTCGAGCCTCTCTTGCTTGAAG
TCGACCAGATCTACCATCTCGCTTGTCCCGCATCTCCAGTTCATTACAAA
TTCAACCCCGTCAAGACTATTAAGACGAATGTGGTGGGAACATTGAACAT
GCTTGGATTGGCGAAGAGAGTGGGAGCGAGGTTCTTATTAACGAGTACCA
GTGAAGTATACGGTGACCCTCTTCAGCATCCACAGAAGGAGACTTACTGG
GGCAACGTCAATCCTATCGGTGTCCGAAGTTGTTACGATGAGGGAAAGCG
AACTGCTGAAACGTTGACCATGGACTACCACAGAGGAGCTGGCGTGGAGG
TTAGGATTGCTAGAATTTTCAACACTTATGGACCCCGTATGTGTATCGAT
GATGGTCGCGTTGTCAGTAATTTTGTTGCTCAGGCTTTAAGGAAGGAGCC
TTTGACTGTATATGGAGATGGGAAGCAGACTAGGAGTTTCCAATTTGTTT
CTGATTTGGTGGAGGGTCTGATGCGCCTCATGGAGGGAGAACATGTGGGT
CCTTTTAATCTTGGAAATCCGGGTGAATTTACCATGCTTGAACTTGCTCA
GGTGGTCCAG
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