CN185118

Overview
NameCN185118
Unique NameCN185118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2460 contig Csv1_Contig2460:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_SHIB3 (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fadJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 65/209 (31.10%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+V    A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEV----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_SHEON (Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis GN=fadJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 66/204 (32.35%), Postives = 101/204 (49.51%), Query Frame = 1
Query:  151 DGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            DG+AI+T+  P   +N L       + +   E      ++ +VL +G    F  G DI++      AGD   +      +V N +E    P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I  ++  K+GL++ VV    LL+ +   AL      KP  +SL
Sbjct:   14 DGIAILTMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQG-HVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKQIAKPVKKSL 216          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL6 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6 GN=fadJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 64/209 (30.62%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +A+IT+  P   +N L     + ++   ++     D++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKDLRGVVFISAKPDNFIAGADINMIANCKTAQEAEALARQGQQLMAE-IHALPVPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECOSE (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SE11) GN=fadJ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.195e-20
Identity = 65/209 (31.10%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+V    A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEV----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECO24 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.195e-20
Identity = 65/209 (31.10%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+V    A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEV----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECO8A (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O8 (strain IAI1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.201e-19
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +A+IT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+V    A+++A + +P  R L
Sbjct:    9 LNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEV----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECO55 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain 55989 / EAEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.201e-19
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +A+IT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+V    A+++A + +P  R L
Sbjct:    9 LNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEV----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_SHISS (Fatty acid oxidation complex subunit alpha OS=Shigella sonnei (strain Ss046) GN=fadJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.049e-19
Identity = 64/209 (30.62%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_SHIFL (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri GN=fadJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.049e-19
Identity = 64/209 (30.62%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_SHIF8 (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=fadJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.049e-19
Identity = 64/209 (30.62%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-INALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
The following BLAST results are available for this feature:
BLAST of CN185118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
FADJ_SHIB37.041e-2031.10Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHEON7.041e-2032.35Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ECOL67.041e-2030.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOSE9.195e-2031.10Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO249.195e-2031.10Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO8A1.201e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO551.201e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SHISS2.049e-1930.62Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIFL2.049e-1930.62Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIF82.049e-1930.62Fatty acid oxidation complex subunit alpha OS=Shig... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185118 ID=CN185118; Name=CN185118; organism=Citrus sinensis; type=EST; length=784bp
GAGGAATTACCTCACGTAAACCACCGTTGTATCTTGTATGTCCTCCATTT
TTCTATTCGGATTGATAGCAAAATCTCCACTAAAAGAAATAATTGATAAT
AATAACAGTAAGCCATGGCAGCACCGCGAGTGATGATGGAAGTCGGAAAC
GACGGCGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGC
TATTCCAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCC
GAGACGACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCT
GGCGGTTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGGGGATGT
TTCGCTGATGCCCGATGTATCGGTTGAACTTGTTGTCAACTTAATTGAAG
ATTGCAAGAAGCCCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGT
GGCTTAGAATTGGCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGAC
TCAACTTGGCTTGCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAG
GCACACAACGTCTACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATG
ATGCTGTTATCTAAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCT
AATTGATGCTGTTGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCT
GGGCTTTAGACATTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCAC
AGGACAGACAAACTTGGTTCTCTTTCTGAAGCAA
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