CN185118

Overview
NameCN185118
Unique NameCN185118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2460 contig Csv1_Contig2460:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_SHESA (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.049e-19
Identity = 65/204 (31.86%), Postives = 100/204 (49.02%), Query Frame = 1
Query:  151 DGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            DG+AI+ +  P   +N L       + +   E      ++ +VL +G    F  G DI++      AGD   +      +V N +E    P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I  ++  K+GL++ VV    LL+ +   AL      KP  +SL
Sbjct:   12 DGIAILMMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQG-HVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRTAKPVKKSL 214          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECOHS (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.049e-19
Identity = 64/209 (30.62%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_KLEP7 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 62/209 (29.67%), Postives = 103/209 (49.28%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            +EV  D +A+IT+  P   +N L     + ++    +      V+ +V ++     F  G DIN+  +   A +   +     +++   I     P+                + CH RI +   KT+LGLPE+ LG++PG GGTQRLPRL+G+S A++MML  K +   +  K GL+D VV    LL+     A+++A + +P  R +
Sbjct:    9 LEVRADKIAVITIDAPGEKMNTLKAEFGSQVRGLIRQLRDDKSVRGVVFISAKADNFIAGADINMIARCRSAQEAEALARQGQQIMAE-IHGLSIPVIAAIHGACLGGGLELALACHGRICSDDEKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMMLTGKQLRPRQALKAGLVDEVVPQAILLQA----AVELALKGRPTSREV 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECOUT (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +  ++     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL5 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +  ++     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECOK1 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O1:K1 / APEC GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +  ++     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECO81 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O81 (strain ED1a) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +  ++     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECO5E (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 64/209 (30.62%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECO57 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O157:H7 GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 64/209 (30.62%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECO45 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +  ++     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
The following BLAST results are available for this feature:
BLAST of CN185118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
FADJ_SHESA2.049e-1931.86Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ECOHS2.049e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_KLEP72.675e-1929.67Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADJ_ECOUT2.675e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOL52.675e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOK12.675e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO812.675e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO5E2.675e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO572.675e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO452.675e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185118 ID=CN185118; Name=CN185118; organism=Citrus sinensis; type=EST; length=784bp
GAGGAATTACCTCACGTAAACCACCGTTGTATCTTGTATGTCCTCCATTT
TTCTATTCGGATTGATAGCAAAATCTCCACTAAAAGAAATAATTGATAAT
AATAACAGTAAGCCATGGCAGCACCGCGAGTGATGATGGAAGTCGGAAAC
GACGGCGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGC
TATTCCAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCC
GAGACGACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCT
GGCGGTTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGGGGATGT
TTCGCTGATGCCCGATGTATCGGTTGAACTTGTTGTCAACTTAATTGAAG
ATTGCAAGAAGCCCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGT
GGCTTAGAATTGGCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGAC
TCAACTTGGCTTGCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAG
GCACACAACGTCTACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATG
ATGCTGTTATCTAAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCT
AATTGATGCTGTTGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCT
GGGCTTTAGACATTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCAC
AGGACAGACAAACTTGGTTCTCTTTCTGAAGCAA
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