CN185118

Overview
NameCN185118
Unique NameCN185118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2460 contig Csv1_Contig2460:1..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECO27 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +  ++     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_YERPS (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis GN=fadJ PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  124 PRVMMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPW 735
            P   + V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A D  ++      ++   I     P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQ-IAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPW 221          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  124 PRVMMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPW 735
            P   + V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A D  ++      ++   I     P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW
Sbjct:   39 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQ-IAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPW 248          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadJ PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  124 PRVMMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPW 735
            P   + V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A D  ++      ++   I     P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQ-IAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPW 221          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadJ PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  124 PRVMMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPW 735
            P   + V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A D  ++      ++   I     P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQ-IAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPW 221          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadJ PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  124 PRVMMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPW 735
            P   + V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A D  ++      ++   I     P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQ-IAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPW 221          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 1
Query:  124 PRVMMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS--RLWALDIAARRKPW 735
            P   + V  D + IIT+  +   VN L       +    ++A +   ++ +V+ +G    F  G DI +      A D  ++      ++   I     P+                + CH+RI +   KT LGLPE+ LG++PG GGTQRLPRLVG+SKA++M+L  K I   +  K+GL+D VV  + LL V+  R  A  +  R  PW
Sbjct:   12 PAFTLNVRPDNIGIITIDVVGDKVNTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACRTAHDARVLAQKGQSILAQ-IAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAGWLNRRALPW 221          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLU (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 63/209 (30.14%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +A+IT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    9 LNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPVPVIAAIHGACLGGGLELALACHGRMCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPQSILLEA----AVELAKQDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_SHIBS (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 4 (strain Sb227) GN=fadJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 63/209 (30.14%), Postives = 104/209 (49.76%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+        +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S  +EM+L  K + +++  KLGL+D VV    LL+V    A+++A + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTVQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTTLEMILTGKQLRAKQALKLGLVDDVVPHSILLEV----AVELAKKDRPSSRPL 212          
BLAST of CN185118 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLC (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fadJ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.784e-19
Identity = 63/209 (30.14%), Postives = 104/209 (49.76%), Query Frame = 1
Query:  136 MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 747
            + V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A +   +     +L+   I     P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++  + +P  R L
Sbjct:    9 LNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELVKQDRPSSRPL 212          
The following BLAST results are available for this feature:
BLAST of CN185118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
FADJ_ECO272.675e-1930.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_YERPS4.564e-1931.75Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPP4.564e-1931.75Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPN4.564e-1931.75Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPE4.564e-1931.75Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPA4.564e-1931.75Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERP34.564e-1931.75Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_ECOLU4.564e-1930.14Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SHIBS5.960e-1930.14Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_ECOLC7.784e-1930.14Fatty acid oxidation complex subunit alpha OS=Esch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006M11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185118 ID=CN185118; Name=CN185118; organism=Citrus sinensis; type=EST; length=784bp
GAGGAATTACCTCACGTAAACCACCGTTGTATCTTGTATGTCCTCCATTT
TTCTATTCGGATTGATAGCAAAATCTCCACTAAAAGAAATAATTGATAAT
AATAACAGTAAGCCATGGCAGCACCGCGAGTGATGATGGAAGTCGGAAAC
GACGGCGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGC
TATTCCAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCC
GAGACGACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCT
GGCGGTTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGGGGATGT
TTCGCTGATGCCCGATGTATCGGTTGAACTTGTTGTCAACTTAATTGAAG
ATTGCAAGAAGCCCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGT
GGCTTAGAATTGGCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGAC
TCAACTTGGCTTGCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAG
GCACACAACGTCTACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATG
ATGCTGTTATCTAAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCT
AATTGATGCTGTTGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCT
GGGCTTTAGACATTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCAC
AGGACAGACAAACTTGGTTCTCTTTCTGAAGCAA
back to top