CN185107

Overview
NameCN185107
Unique NameCN185107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRC10_ORYSJ (Glutaredoxin-C10 OS=Oryza sativa subsp. japonica GN=GRXC10 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 52/105 (49.52%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  171 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGH-GVNPAVFEVADGDEAAVLD-ELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            V K+  E AV+V     C MCH V +LL+G  GVN AV E+        ++ EL+R     GGG    PAVFVGG L GG +RVM+ H++G+LVP+LK AGALWL
Sbjct:    4 VAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRLNGGGGGGRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.050e-17
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  171 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSR-IDVENG----GGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            + KM++E  V++  +  CCM H +KTLL   G NPAV+E         LDE+SR  ++E      G     P VF+GG+L GG + VM+ H++G L+P+LK AGALW+
Sbjct:    4 ITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYE---------LDEISRGREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  165 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSR-IDVENG----GGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            ++++KM+ E +V++  +  CCM H +KTL L  GVNP ++E         LDE+SR  ++E+     G     P VF+GG+L GG ++VM+ H++  LVP+LK AGALWL
Sbjct:    2 ENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYE---------LDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.497e-17
Identity = 43/105 (40.95%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  165 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            ++++KM+ E +V++  +  CCM H +KTL L  GVNP ++E+   DE  +  E+ +   + G      P VF+GG+L GG ++VM+ H++  LVP+LK AGALWL
Sbjct:    2 ENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYEL---DEINIGREIEQALAQLGCSPT-VPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC6_ARATH (Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  117 SSARGGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQF---PAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            +S+    + EE  T AK + +++ E+ V++  R  CCMCHV+K LL   GV P V E+ D + +++   L     E  GG+      PAVF+G +  GGL+ ++A H+SG LVP L + GALW+
Sbjct:   25 TSSTSLSIDEEESTEAK-IRRLISEHPVIIFSRSSCCMCHVMKRLLATIGVIPTVIELDDHEVSSLPTALQD---EYSGGVSVVGPPPAVFIGRECVGGLESLVALHLSGQLVPKLVQVGALWV 144          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  171 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSR-IDVENG----GGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            ++KM+ E +V++  +  CCM H +KTL +  GVNP ++E         LDE++R  ++E      G     P VF+GG+L GG ++VM+ H++  LVP+LK  GALWL
Sbjct:    4 LQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYE---------LDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  162 AKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            A+ V ++  + AV++ G   C MCHVVKTL    GV+ AV EV   D+     ++ R      G     PAVF+GGKL G  D+VM+ H++G LVP+L+EAGALWL
Sbjct:    2 AERVARLSSQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEV---DKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGALWL 104          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  171 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            V ++  + AV++     CCMCH V  L    GVNP V E+   DE     E+ +      G     PAVF+GG+L G  D+VM+ H+SG+LVP+L+ AGALW+
Sbjct:    4 VNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVEL---DEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  162 AKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDE--LSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            A+ V ++  E AV+V  + GCCMC  V TLL    V+ AV E+        +++    R+   +G G    PAVF+GG L GG  +VMA H+ G+LVP+LK AGALWL
Sbjct:    2 AEMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGALWL 109          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRC10_ARATH (Glutaredoxin-C10 OS=Arabidopsis thaliana GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   93 PAVAAGNTSSARGGGVTEEADTAAKSVEKMLVENAVLVLGR-PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALW 476
            PA +  ++S+A      +E +T+   + +++ E+ V++  R   CCMCHV+K LL   GV+P V E+ DG+ A +  E +             P +F+GG   GG + ++A H+SG L+P L E GALW
Sbjct:   32 PAPSTVSSSTASTSLSFDEEETSESKIGRLISEHPVIIFTRFSSCCMCHVMKKLLSTVGVHPTVIEIDDGEIAYLAVEAA-------------PVLFIGGTCVGGFESLVALHLSGQLIPRLVEVGALW 147          
The following BLAST results are available for this feature:
BLAST of CN185107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GRC10_ORYSJ7.046e-1849.52Glutaredoxin-C10 OS=Oryza sativa subsp. japonica G... [more]
GRXS2_ARATH2.050e-1742.59Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]
GRXS3_ARATH2.678e-1741.82Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH3.497e-1740.95Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GRXC6_ARATH1.736e-1638.71Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 P... [more]
GRXS4_ARATH3.866e-1639.81Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXC2_ORYSJ3.866e-1645.28Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GRXC1_ORYSJ3.866e-1641.75Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRC11_ORYSJ5.050e-1643.52Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GRC10_ARATH8.613e-1634.88Glutaredoxin-C10 OS=Arabidopsis thaliana GN=GRXC10... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185107 ID=CN185107; Name=CN185107; organism=Citrus sinensis; type=EST; length=605bp
GAGGCCCACATCTTTCAGAAAAATCAATCTTTGTGCATAAATTAAACAAT
TCCATGCAAGAAGCAATTCCCTATAGAACATATATTCACGGCCCCGCCGT
CGCCGCCGGCAACACGTCATCGGCGCGCGGTGGTGGTGTCACTGAAGAAG
CGGATACCGCTGCAAAAAGTGTGGAAAAGATGCTGGTCGAGAATGCAGTG
TTGGTACTTGGGAGACCCGGGTGTTGCATGTGCCATGTCGTGAAAACGTT
GCTGCTGGGGCACGGTGTGAACCCTGCGGTGTTCGAGGTGGCCGATGGTG
ATGAAGCTGCTGTTCTTGATGAATTGTCGAGAATTGATGTCGAAAACGGT
GGTGGGATTATACAATTTCCGGCCGTTTTTGTCGGAGGGAAGTTGTTTGG
TGGATTGGATCGGGTAATGGCTACACATATTTCCGGCGATTTGGTGCCTA
TTTTGAAAGAGGCCGGGGCTTTGTGGCTATGATCTATCCTCTGCCTCTTC
CTCCATTAATTTTATCTCGATTTCCTTTCTGTCTTTGATGAATGTAGTTA
TGTAGACCATGTAATTCTTCTATGGATCAATATCAAGTTTTCGTGTATTA
ATTAA
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