CN185107

Overview
NameCN185107
Unique NameCN185107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  165 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSR-IDVENG----GGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            + ++KM+ E +V++     CCM H +KTL L  GVNP ++E         LDE++R  ++E      G     P VF+GG+L GG ++VM+ H++  L+P+LK  GALWL
Sbjct:    2 EKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYE---------LDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRC12_ORYSJ (Putative glutaredoxin-C12 OS=Oryza sativa subsp. japonica GN=GRXC12 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  162 AKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLD-ELSRIDVENGG-GIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            A+ V ++  E AV+V  + GCCMC  V TLL    V+ AV E+        ++ EL+R    +GG G    PAVF+GG L GG  +VM  H+ G+LVP+LK AGALWL
Sbjct:    2 AEMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSLVGGTSKVMTVHLKGELVPMLKSAGALWL 109          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  165 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSR-IDVENG----GGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            + ++KM  E ++++  +  CCM H +KTL L  GVNP ++E         LDE++R  ++E      G     P VF+GG+L GG ++VM+ H++  L+P+LK  GALWL
Sbjct:    2 EKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYE---------LDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGALWL 102          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRC13_ORYSJ (Glutaredoxin-C13 OS=Oryza sativa subsp. japonica GN=GRXC13 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  162 AKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLD-ELSRIDVENGG-GIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            A+ V ++  E AV+V  + GCCMC  V TLL    V+ AV E+        ++ EL+R    +GG G    PAVF+GG L G   +VMA H+ G+LVP+LK AGALWL
Sbjct:    2 AEMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSLVGSTSKVMAMHLKGELVPMLKNAGALWL 109          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXC7_ORYSJ (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica GN=GRXC7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 50/136 (36.76%), Postives = 68/136 (50.00%), Query Frame = 3
Query:   96 AVAAGNTSSARGGGV----------TEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGAL 473
            AVA    SS RGGG               +  A+ + +++ E+ V++  R GCCMCHV++ LL   G +  V E         LDE +     +       PA+FVGG   GGLD +M  H+SG LVP L+E GAL
Sbjct:   10 AVAGDAPSSTRGGGGGGMLGLTLFDPPGGEQPAERIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIE---------LDEAAEEAAASAAAAAAVPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  171 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            V K+  E AV++     CCMCH V  L    GVN  V E+   D+     E+ R  ++  G     P VF+GGKL GG +++M+ H+ G+L+P+LK AGALWL
Sbjct:    4 VMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHEL---DQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.001e-13
Identity = 45/103 (43.69%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  171 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            V K+  E AV++     C MCH V +L    GV  AV E+ D D     D + R      G     PAVF+ GKL G  DRVM+ H++G LVP+LK AGA+WL
Sbjct:    4 VAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHEL-DRDPLHGRD-MERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS8_ORYSJ (Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. japonica GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  171 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEV----ADGD-EAAVLDELSRIDVENGGGI---IQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            V ++  + AV+V  +  C M H V  LL   GV+  V E+    A  D E A+   L      NGGG    +  P VF+GG+L G  DRVM+ H++G LVP+L++AGALW+
Sbjct:    4 VTRLASQKAVVVFSKSSCGMSHAVTRLLRELGVDARVVELDEEPAGADMENALAGMLLAGTAANGGGRGRGVVVPTVFIGGRLVGSTDRVMSLHVAGGLVPLLRDAGALWV 114          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS2_ORYSJ (Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.164e-12
Identity = 50/129 (38.76%), Postives = 69/129 (53.49%), Query Frame = 3
Query:   96 AVAAGNTSSARGGGVTE---EADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGAL 473
            AVAA      RG    +   E +  A+ V +++ E+ V+V  R GC M HV++ LL   G +  V E+  G  AA  +E +       GG    PA+FVGG   GGL+ +M  H+SG LVP L+E GAL
Sbjct:    3 AVAAAAGMMRRGSLTIDPAGEEEAPAERVGRLVRESPVVVFARRGCYMAHVMRRLLAAVGAHATVIELEGG--AAEEEEAAL------GGGAALPALFVGGDPVGGLEGLMGLHLSGRLVPRLREVGAL 123          
BLAST of CN185107 vs. ExPASy Swiss-Prot
Match: GRXS1_ARATH (Putative monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  165 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALWL 479
            + +  +L +  V++  +  CCM H +K+L+ G+G N  V+E+   DE +   E+ R  VE G      PAVF+G +L GG +++M+  +   L  +L+ AGA+W+
Sbjct:    2 EKISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYEL---DEMSNGPEIERALVELGCKPT-VPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102          
The following BLAST results are available for this feature:
BLAST of CN185107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GRXS8_ARATH1.125e-1539.09Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]
GRC12_ORYSJ1.125e-1545.37Putative glutaredoxin-C12 OS=Oryza sativa subsp. j... [more]
GRXS7_ARATH1.919e-1538.18Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRC13_ORYSJ2.506e-1545.37Glutaredoxin-C13 OS=Oryza sativa subsp. japonica G... [more]
GRXC7_ORYSJ3.273e-1536.76Glutaredoxin-C7 OS=Oryza sativa subsp. japonica GN... [more]
GRC14_ORYSJ4.275e-1541.75Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRC15_ORYSJ4.001e-1343.69Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]
GRXS8_ORYSJ5.226e-1340.54Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. j... [more]
GRXS2_ORYSJ1.164e-1238.76Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. j... [more]
GRXS1_ARATH9.855e-1233.33Putative monothiol glutaredoxin-S1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185107 ID=CN185107; Name=CN185107; organism=Citrus sinensis; type=EST; length=605bp
GAGGCCCACATCTTTCAGAAAAATCAATCTTTGTGCATAAATTAAACAAT
TCCATGCAAGAAGCAATTCCCTATAGAACATATATTCACGGCCCCGCCGT
CGCCGCCGGCAACACGTCATCGGCGCGCGGTGGTGGTGTCACTGAAGAAG
CGGATACCGCTGCAAAAAGTGTGGAAAAGATGCTGGTCGAGAATGCAGTG
TTGGTACTTGGGAGACCCGGGTGTTGCATGTGCCATGTCGTGAAAACGTT
GCTGCTGGGGCACGGTGTGAACCCTGCGGTGTTCGAGGTGGCCGATGGTG
ATGAAGCTGCTGTTCTTGATGAATTGTCGAGAATTGATGTCGAAAACGGT
GGTGGGATTATACAATTTCCGGCCGTTTTTGTCGGAGGGAAGTTGTTTGG
TGGATTGGATCGGGTAATGGCTACACATATTTCCGGCGATTTGGTGCCTA
TTTTGAAAGAGGCCGGGGCTTTGTGGCTATGATCTATCCTCTGCCTCTTC
CTCCATTAATTTTATCTCGATTTCCTTTCTGTCTTTGATGAATGTAGTTA
TGTAGACCATGTAATTCTTCTATGGATCAATATCAAGTTTTCGTGTATTA
ATTAA
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