CN185104

Overview
NameCN185104
Unique NameCN185104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2771 contig Csv1_Contig2771:41..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_BACAH (5-dehydro-2-deoxygluconokinase OS=Bacillus thuringiensis (strain Al Hakam) GN=iolC PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 40/132 (30.30%), Postives = 66/132 (50.00%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST-ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSE 560
            SRLG  + F+GK+ DD+ G  +   LK+N ++T  +  D T A T LAF  +++  +   L +R   AD+ L  +E+ ++ IKQ         +L   P R     A+  A +   ++ +D + R   W SE
Sbjct:   55 SRLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIHIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYAHKHDVVVFFDVDYRPYTWQSE 186          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC2_BACCZ (5-dehydro-2-deoxygluconokinase 2 OS=Bacillus cereus (strain ZK / E33L) GN=iolC2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 39/132 (29.55%), Postives = 68/132 (51.52%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST-ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSE 560
            +RLG  + F+GK+ DD+ G  +   L++NN++T  +  D T A T LAF  +++  +   L +R   AD+ L  +E+ ++ IKQ         +L   P R     A+  A++   ++ +D + R   W SE
Sbjct:   55 TRLGLQTGFIGKVSDDQMGRFITRYLQDNNINTDQICIDRTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSE 186          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_GEOTN (5-dehydro-2-deoxygluconokinase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=iolC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 38/134 (28.36%), Postives = 68/134 (50.75%), Query Frame = 3
Query:  165 ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTAR-TALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEE 563
            ++RLG  + F+G++ DD+ G  +   LK N +DTS V  D +   T LAF  +++  +   L +R   AD+ L  +++ ++ I+Q         +L   P R     A+  A+  G ++ +D + R   W S+E
Sbjct:   54 MARLGMKTGFIGRVADDQMGRFIVQYLKNNGIDTSHVITDKSGSVTGLAFTEIKSPTDCSILMYRDNVADLKLEPNDIHEDYIRQAKCLLISGTALAKSPSREAVFLALEYARRHGVVVFFDLDYRPYTWQSKE 187          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_BACHK (5-dehydro-2-deoxygluconokinase OS=Bacillus thuringiensis subsp. konkukian GN=iolC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST-ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSE 560
            +RLG  + F+GK+ DD+ G  +   LK+N ++T  +  D T A T LAF  +++  +   L +R   AD+ L  +E+ ++ IKQ         +L   P R     A+  A++   ++ +D + R   W SE
Sbjct:   55 ARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIPIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSE 186          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_BACAN (5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis GN=iolC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST-ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSE 560
            +RLG  + F+GK+ DD+ G  +   LK+N ++T  +  D T A T LAF  +++  +   L +R   AD+ L  +E+ ++ IKQ         +L   P R     A+  A++   ++ +D + R   W SE
Sbjct:   55 ARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIPIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSE 186          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_BACAC (5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=iolC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST-ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSE 560
            +RLG  + F+GK+ DD+ G  +   LK+N ++T  +  D T A T LAF  +++  +   L +R   AD+ L  +E+ ++ IKQ         +L   P R     A+  A++   ++ +D + R   W SE
Sbjct:   55 ARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIPIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSE 186          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_BACAA (5-dehydro-2-deoxygluconokinase OS=Bacillus anthracis (strain A0248) GN=iolC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 39/132 (29.55%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST-ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSE 560
            +RLG  + F+GK+ DD+ G  +   LK+N ++T  +  D T A T LAF  +++  +   L +R   AD+ L  +E+ ++ IKQ         +L   P R     A+  A++   ++ +D + R   W SE
Sbjct:   55 ARLGLQTGFIGKVSDDQMGRFITGYLKDNKINTDQIPIDCTGAVTGLAFTEIKSPEDCSILMYRDNVADLNLDPTEVSEDYIKQSKALLISGTALAKSPSREAVFLALEYARKHDVVVFFDVDYRPYTWQSE 186          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_BACSK (5-dehydro-2-deoxygluconokinase OS=Bacillus clausii (strain KSM-K16) GN=iolC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 39/133 (29.32%), Postives = 67/133 (50.38%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTA-LAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEE 563
            ++LG    FVGK+ DD+ G  +++ ++E  VDTS +  D     A L F  + +  E   L +R  +AD+ L   E+D   ++   +      +L   P R   L A++LAK +G+ + ++ + R   W S E
Sbjct:   54 AKLGLKVGFVGKIPDDQHGRFISSYMREAGVDTSQLVIDREGHKAGLTFTEILSPEECSILMYREKAADLYLSPDEIDAGYVRSAKVLLISGTALAQSPSREAALKAVSLAKAAGTKVVFELDYRPYTWSSRE 186          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_LISMH (5-dehydro-2-deoxygluconokinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=iolC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 37/149 (24.83%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTAR-TALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADII 611
            ++LG    F+GK+  D+ G  +   +++ +++T G+  D+  R   LAF  +++  E   L +R   AD+ L   E+ ++ IK+  +      +L   P R   L A++LA+++   ++++ + R   W + E        + +QAD+I
Sbjct:   54 AKLGLKVGFIGKISADQHGRFIEKYMRDLSINTDGMVKDTEGRKVGLAFTEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKAVSLARKNDVAIAFELDYRPYTWTNTEETAVYYSLVAEQADVI 202          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_LISMF (5-dehydro-2-deoxygluconokinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=iolC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 37/149 (24.83%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTAR-TALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADII 611
            ++LG    F+GK+  D+ G  +   +++ +++T G+  D+  R   LAF  +++  E   L +R   AD+ L   E+ ++ IK+  +      +L   P R   L A++LA+++   ++++ + R   W + E        + +QAD+I
Sbjct:   54 AKLGLKVGFIGKISADQHGRFIEKYMRDLSINTDGMVKDTEGRKVGLAFTEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKAVSLARKNDVAVAFELDYRPYTWTNTEETAVYYSLVAEQADVI 202          
The following BLAST results are available for this feature:
BLAST of CN185104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IOLC_BACAH4.720e-1230.305-dehydro-2-deoxygluconokinase OS=Bacillus thuring... [more]
IOLC2_BACCZ6.165e-1229.555-dehydro-2-deoxygluconokinase 2 OS=Bacillus cereu... [more]
IOLC_GEOTN8.051e-1228.365-dehydro-2-deoxygluconokinase OS=Geobacillus ther... [more]
IOLC_BACHK8.051e-1229.555-dehydro-2-deoxygluconokinase OS=Bacillus thuring... [more]
IOLC_BACAN8.051e-1229.555-dehydro-2-deoxygluconokinase OS=Bacillus anthrac... [more]
IOLC_BACAC8.051e-1229.555-dehydro-2-deoxygluconokinase OS=Bacillus anthrac... [more]
IOLC_BACAA8.051e-1229.555-dehydro-2-deoxygluconokinase OS=Bacillus anthrac... [more]
IOLC_BACSK1.794e-1129.325-dehydro-2-deoxygluconokinase OS=Bacillus clausii... [more]
IOLC_LISMH3.059e-1124.835-dehydro-2-deoxygluconokinase OS=Listeria monocyt... [more]
IOLC_LISMF3.996e-1124.835-dehydro-2-deoxygluconokinase OS=Listeria monocyt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006M02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185104 ID=CN185104; Name=CN185104; organism=Citrus sinensis; type=EST; length=725bp
TTTCTGCTAGTATGGATGGAGGGTCTGGAGCTTATGATCGGCTAGTTGTT
TGCTTTGGGGAAATGTTGATCGATTTTGTTCCAACTGTTGGAGGGGTTTC
ACTTGCTGAAGCACCTGCTTTCAAGAAGGCTCCTGGTGGTGCTCCTGCCA
ATGTGGCTGTTGGCATATCGAGGTTAGGAGGGTCATCAGCTTTCGTCGGT
AAGCTAGGAGACGATGAATTTGGTTACATGTTGGCTAACATTTTAAAAGA
GAACAATGTCGATACATCCGGTGTTCGTTATGATTCCACTGCAAGGACTG
CCTTGGCGTTTGTTACACTCAGAGCTGATGGTGAGCGTGAATTTTTGTTT
TTTCGTCATCCAAGTGCTGACATGCTTCTATGTGAATCGGAACTTGACAA
AAACCTCATTAAGCAGGGCAGCATCTTCCACTATGGTTCAATTAGTTTAA
TTGCAGAACCATGCAGGTCAACTCAACTTGCTGCCATGAACTTGGCCAAA
GAGTCTGGTAGCATCCTCTCCTATGATCCTAATTTGAGATTGCCACTATG
GCCATCAGAAGAGGCTGCTCGCGAGGGCATAATGAGTATATGGGATCAAG
CAGATATAATAAAGGTAAAGCGATGATGAAATTACATTCTTAACTGGTGG
TGATGATCATAATGATGATAACGTGGTGTTAGAGAAGCTGTTTCATCCTA
ATCTCAAGCTTTTGATTGTCACTGA
back to top