CN185104

Overview
NameCN185104
Unique NameCN185104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2771 contig Csv1_Contig2771:41..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_LISMC (5-dehydro-2-deoxygluconokinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=iolC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 37/149 (24.83%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTAR-TALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADII 611
            ++LG    F+GK+  D+ G  +   +++ +++T G+  D+  R   LAF  +++  E   L +R   AD+ L   E+ ++ IK+  +      +L   P R   L A++LA+++   ++++ + R   W + E        + +QAD+I
Sbjct:   54 AKLGLKVGFIGKISADQHGRFIEKYMRDLSINTDGMVKDTEGRKVGLAFTEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKAVSLARKNDVAVAFELDYRPYTWTNTEETAVYYSLVAEQADVI 202          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_BACLD (5-dehydro-2-deoxygluconokinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=iolC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 42/149 (28.19%), Postives = 72/149 (48.32%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTA-LAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADII 611
            S+LG  + F+GK+ DD+ G  +   ++   VDTS +  D     A LAF  + +  E   L +R   AD+ L  SE++++ I +  +      +L   P R   L A+ LAK+    + ++ + R   W S E        + +Q+DI+
Sbjct:   54 SKLGLKTGFIGKIPDDQHGRFIETYMRNTGVDTSQMAVDKDGHKAGLAFTEILSPEECSILMYRDDVADLYLAPSEVNEDYIAKSKMLLVSGTALAKSPSREAVLKAVQLAKKHQVKVVFELDYRPYTWTSAEETAVYYTLVAEQSDIV 202          
BLAST of CN185104 vs. ExPASy Swiss-Prot
Match: IOLC_BACHD (5-dehydro-2-deoxygluconokinase OS=Bacillus halodurans GN=iolC PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 40/149 (26.85%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  168 SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTA-RTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADII 611
            S+LG  + F+GK+ DD+ G  + + ++   VDTS +  D    +T LAF  +++  E   L +R   AD+ L   E+++  I++  +      +L   P R   L A+ LAK +   + ++ + R   W + E        + +Q+DI+
Sbjct:   54 SKLGLKAGFIGKIADDQHGRFIESYMRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSILMYRQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIV 202          
The following BLAST results are available for this feature:
BLAST of CN185104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IOLC_LISMC3.996e-1124.835-dehydro-2-deoxygluconokinase OS=Listeria monocyt... [more]
IOLC_BACLD3.996e-1128.195-dehydro-2-deoxygluconokinase OS=Bacillus licheni... [more]
IOLC_BACHD3.996e-1126.855-dehydro-2-deoxygluconokinase OS=Bacillus halodur... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006M02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185104 ID=CN185104; Name=CN185104; organism=Citrus sinensis; type=EST; length=725bp
TTTCTGCTAGTATGGATGGAGGGTCTGGAGCTTATGATCGGCTAGTTGTT
TGCTTTGGGGAAATGTTGATCGATTTTGTTCCAACTGTTGGAGGGGTTTC
ACTTGCTGAAGCACCTGCTTTCAAGAAGGCTCCTGGTGGTGCTCCTGCCA
ATGTGGCTGTTGGCATATCGAGGTTAGGAGGGTCATCAGCTTTCGTCGGT
AAGCTAGGAGACGATGAATTTGGTTACATGTTGGCTAACATTTTAAAAGA
GAACAATGTCGATACATCCGGTGTTCGTTATGATTCCACTGCAAGGACTG
CCTTGGCGTTTGTTACACTCAGAGCTGATGGTGAGCGTGAATTTTTGTTT
TTTCGTCATCCAAGTGCTGACATGCTTCTATGTGAATCGGAACTTGACAA
AAACCTCATTAAGCAGGGCAGCATCTTCCACTATGGTTCAATTAGTTTAA
TTGCAGAACCATGCAGGTCAACTCAACTTGCTGCCATGAACTTGGCCAAA
GAGTCTGGTAGCATCCTCTCCTATGATCCTAATTTGAGATTGCCACTATG
GCCATCAGAAGAGGCTGCTCGCGAGGGCATAATGAGTATATGGGATCAAG
CAGATATAATAAAGGTAAAGCGATGATGAAATTACATTCTTAACTGGTGG
TGATGATCATAATGATGATAACGTGGTGTTAGAGAAGCTGTTTCATCCTA
ATCTCAAGCTTTTGATTGTCACTGA
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