CN185093

Overview
NameCN185093
Unique NameCN185093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 55/169 (32.54%), Postives = 91/169 (53.85%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 650
            +F   E    ++GL  AGKT+++  +     + + IPT+GFN+  VT   +T+ +WD+GGQ++ R +W+ Y    + +++VVD++D + +P A+ EL  LL +P L+   LLV  NK D   A S   L   L L S+ +RE      +      +   + W+ K  KT
Sbjct:   12 MFPNIECRTLMLGLDGAGKTTILYKLKLNE-TVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKKQMKT 179          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.956e-20
Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  153 KQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 635
            ++E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ+  R+ W  Y      +++VVD+ADR  +   + EL  LL++  L+G  LL+  NK D   ALS  A+ + L L+SI          S     ++   IDWL+
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 55/173 (31.79%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  129 NWLRSLFFK-QEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC-CYMISCKDSINIDAVIDWLIKH 641
            NWL+      +++ L ++GL NAGKT+ V  I  G    D+ PTVGF+   + +G   + ++DLGG +R R +W+ Y      +++VVD++D   +   R  + E+L  P ++G P+LVL NK D+  A+++  +++ L LE + +   C C +  C   +     +D  IK+
Sbjct:   10 NWLKRWREPARKVTLVMVGLDNAGKTATVRGIQ-GESPLDVAPTVGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKLVNENKCLCQIEPCSAVLGYGKKVDKSIKN 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 54/168 (32.14%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  153 KQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            ++E+ + L+GL NAGKT+++  +     +E + PT GF +R +    +   +WD+GGQ+  R  W+ Y     AI++VVD+ D   +   R+ L ELL++  L    +LVL NK D S ALS + +   L +          + +S    +NI   I WL    K  K
Sbjct:   14 EREVRVLLLGLDNAGKTTILKCLLNEDVNE-VSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLKEIK 180          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  153 KQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 635
            ++++ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ+  R+ W  Y      +++VVD+ADR  +   + EL  LL++  L+G  LL+  NK D   ALS  A+ + L L+SI          S     ++   IDWL+
Sbjct:   14 ERDVRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 54/168 (32.14%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            N   S+F  + ++L ++GL  +GKT+++  +         I T+G+N+  +   ++ + LWDL G+ R RT+W+ +    +AI++VVD++DR  +  A SEL +L+ +  L G  LL+   K D    +    L DQLGL  I DR          + I I   +DWL
Sbjct:    7 NPFSSIFKSKAIKLLMLGLDGSGKTTILYKLMLNEVVST-ISTLGYNVETIQHKHLNLTLWDLAGEERIRTLWKPFYNKCTAIIFVVDSSDRLRIDEAASELAKLMKEEELKGCSLLIFATKQDCISPMEIPELTDQLGLHDIKDRRWYVQPTRTLEGIGIYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 57/153 (37.25%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  123 ILNW----LRSL-FFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            I+NW    L SL    +  +L  +GL NAGKT+L++ +     +  + PT+     ++  GNV    +DLGG ++ R +W+ Y   V+ I+++VDA D D  P A++EL  LL    L+ +P ++LGNKID  EA+S++ L  QLGL   T +
Sbjct:    3 IINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAI-LQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQTTGK 154          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = 3
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI 557
            MGFL  IL   R+   ++EM + ++GL NAGKT+L+        ++ + PT+GF+++ V   +  + LWD+GGQ+  R+ W+ Y     A+++VVD++DR+ +     EL +LL +  LSG  LLVL NK D   A+   ++   L L+SI
Sbjct:    1 MGFL-KILRKQRAR--EREMRILILGLDNAGKTTLMKKFLDEP-TDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAIDVNSIAQVLELQSI 147          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = 3
Query:  147 FFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ DR+ +  A  EL ++L +  L    LLV  NK D   A+S   + D+L L S+  R+             +   +DWL
Sbjct:   13 FGKKDMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.269e-19
Identity = 51/167 (30.54%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  156 QEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 653
            +E+ + L+GL NAGKT+++  +++    + + PT GFN++ V   G++ + +WD+GGQR  R  W  Y   +  +++V+D+ D+        EL ELL +  L  +P+L+  NK D   A S + +  +L L+ + DR       S   +  I+  I W+  + K A
Sbjct:   16 REIRILLLGLDNAGKTTILKQLSSEDV-QHVTPTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNLKPA 181          
The following BLAST results are available for this feature:
BLAST of CN185093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
ARF11_CAEEL1.733e-2032.54ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARL2_MOUSE2.956e-2032.92ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
AR13B_DANRE3.861e-2031.79ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
ARL_SCHPO8.602e-2032.14ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL2_RAT8.602e-2032.30ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARFD_DICDI1.123e-1932.14ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
SAR1_MAGGR1.467e-1937.25Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
ARL2_CAEBR1.467e-1937.09ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARF1_DICDI1.467e-1932.10ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARL3_CAEEL3.269e-1930.54ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185093 ID=CN185093; Name=CN185093; organism=Citrus sinensis; type=EST; length=753bp
GAGGCTTGAGTTTCCTTTTGGCTCTTTCGCTACTTTCCCTCATTTCCCCG
TTTCCTTTTCCCCATTCGTAACCTCAGATTCAGTCTCTGCATCAGTTTTC
CCAAATGGGTTTTCTCGATTCTATTCTCAATTGGCTCCGCAGCTTATTCT
TTAAACAGGAAATGGAACTTTCTCTCATAGGCCTTCAGAATGCAGGAAAG
ACGTCTCTTGTTAATGCCATTGCTACAGGAGGATATAGTGAAGACATGAT
TCCAACTGTCGGTTTTAATATGCGGAAAGTTACAAAGGGAAATGTTACAA
TAAAGCTCTGGGACCTTGGAGGTCAACGGAGGTTTCGTACTATGTGGGAG
CGTTATTGTCGTGGGGTTTCTGCAATCTTATATGTAGTCGATGCCGCTGA
TAGAGACAGTGTTCCTATAGCTCGGAGTGAATTGCATGAGCTTCTGATGA
AACCTTCCTTGAGTGGAATCCCTTTGCTTGTTCTTGGCAACAAAATCGAC
AAGTCAGAAGCTCTTTCTAAGCAAGCTTTAGTGGATCAACTAGGCCTTGA
ATCAATTACTGATAGAGAGGTGTGCTGCTACATGATATCATGCAAGGACT
CTATAAACATAGATGCTGTCATTGATTGGCTTATCAAGCACTCTAAAACT
GCCAAATAAGCAAGCTTCAATGCTATTCGACTTTTATTTTCCTGAAGAAT
GATCGAGGCAAAGGAACGAAACAGTAAAGTAGAACAAGTGAAAGAAAACT
TCC
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