CN185093

Overview
NameCN185093
Unique NameCN185093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DRD V  AR ELH +L +  L    LLV  NK D   A++   ++D+LGL S+  R              +   +DWL
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.375e-24
Identity = 60/171 (35.09%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  120 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            S    L  LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DRD V  AR ELH +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL
Sbjct:    4 SFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 650
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DRD V  AR ELH +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL  +  T
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIAT 179          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  135 LRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y  G   +++VVD ADRD +  AR+ELH ++    +    +L+  NK D  +A+    + ++LGL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 58/163 (35.58%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DRD V  AR ELH +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 58/163 (35.58%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DRD V  AR ELH +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 66/184 (35.87%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            MG L SIL  L+S    QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQR+ R  W  Y      ++YV+D+ADR        EL ELL +  LSG+P+L+  NK D   A     + + L L +I DR       S      +   ++W+ K+  T K
Sbjct:    1 MGLL-SILRKLKSTP-DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALSGEGVQDGMNWVCKNVSTKK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  135 LRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y  G   +++VVD ADRD +  AR ELH ++    +    +L+  NK D  +A+    + ++LGL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  135 LRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y  G   +++VVD ADRD +  AR ELH ++    +    +L+  NK D  +A+    + ++LGL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  135 LRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y  G   +++VVD ADRD +  AR ELH ++    +    +L+  NK D  +A+    + ++LGL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
The following BLAST results are available for this feature:
BLAST of CN185093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
ARF1_DAUCA2.584e-2435.58ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA3.375e-2435.09ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_MAIZE5.756e-2434.91ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF3_DROME5.756e-2438.19ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF2_ARATH5.756e-2435.58ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ARATH5.756e-2435.58ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARL3_TAEGU7.518e-2435.87ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]
ARF6_RAT7.518e-2438.19ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG7.518e-2438.19ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE7.518e-2438.19ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185093 ID=CN185093; Name=CN185093; organism=Citrus sinensis; type=EST; length=753bp
GAGGCTTGAGTTTCCTTTTGGCTCTTTCGCTACTTTCCCTCATTTCCCCG
TTTCCTTTTCCCCATTCGTAACCTCAGATTCAGTCTCTGCATCAGTTTTC
CCAAATGGGTTTTCTCGATTCTATTCTCAATTGGCTCCGCAGCTTATTCT
TTAAACAGGAAATGGAACTTTCTCTCATAGGCCTTCAGAATGCAGGAAAG
ACGTCTCTTGTTAATGCCATTGCTACAGGAGGATATAGTGAAGACATGAT
TCCAACTGTCGGTTTTAATATGCGGAAAGTTACAAAGGGAAATGTTACAA
TAAAGCTCTGGGACCTTGGAGGTCAACGGAGGTTTCGTACTATGTGGGAG
CGTTATTGTCGTGGGGTTTCTGCAATCTTATATGTAGTCGATGCCGCTGA
TAGAGACAGTGTTCCTATAGCTCGGAGTGAATTGCATGAGCTTCTGATGA
AACCTTCCTTGAGTGGAATCCCTTTGCTTGTTCTTGGCAACAAAATCGAC
AAGTCAGAAGCTCTTTCTAAGCAAGCTTTAGTGGATCAACTAGGCCTTGA
ATCAATTACTGATAGAGAGGTGTGCTGCTACATGATATCATGCAAGGACT
CTATAAACATAGATGCTGTCATTGATTGGCTTATCAAGCACTCTAAAACT
GCCAAATAAGCAAGCTTCAATGCTATTCGACTTTTATTTTCCTGAAGAAT
GATCGAGGCAAAGGAACGAAACAGTAAAGTAGAACAAGTGAAAGAAAACT
TCC
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