CN185093

Overview
NameCN185093
Unique NameCN185093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  135 LRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y  G   +++VVD ADRD +  AR ELH ++    +    +L+  NK D  +A+    + ++LGL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  135 LRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y  G   +++VVD ADRD +  AR ELH ++    +    +L+  NK D  +A+    + ++LGL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    K  K
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    K  K
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    K  K
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    K  K
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    K  K
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    K  K
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 52/157 (33.12%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  111 FLDSILNWLRSLFF----KQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 569
            F +++ ++  ++F     K++  + +IGL  AGK++L+  +  G      +PT+GFN+  +   N+++ +WD+GGQ + R +W+ Y  G +AI++VVD+ DR+ +   + E+  LL++  L GI +L+  NK D + A++   +VD L L SI DR+
Sbjct:    5 FFNNLASFFSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVST-VPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRK 160          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23
Identity = 62/182 (34.07%), Postives = 95/182 (52.20%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK*ASFNAIRLLF 689
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DRD V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    +  K A+ N   LL+
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQK-ANCNGTMLLW 191          
The following BLAST results are available for this feature:
BLAST of CN185093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
ARF6_HUMAN7.518e-2438.19ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK7.518e-2438.19ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF3_TAKRU7.518e-2434.09ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT7.518e-2434.09ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB7.518e-2434.09ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE7.518e-2434.09ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN7.518e-2434.09ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN7.518e-2434.09ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARFH_DICDI9.819e-2433.12ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARF1_SOLTU1.282e-2334.07ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185093 ID=CN185093; Name=CN185093; organism=Citrus sinensis; type=EST; length=753bp
GAGGCTTGAGTTTCCTTTTGGCTCTTTCGCTACTTTCCCTCATTTCCCCG
TTTCCTTTTCCCCATTCGTAACCTCAGATTCAGTCTCTGCATCAGTTTTC
CCAAATGGGTTTTCTCGATTCTATTCTCAATTGGCTCCGCAGCTTATTCT
TTAAACAGGAAATGGAACTTTCTCTCATAGGCCTTCAGAATGCAGGAAAG
ACGTCTCTTGTTAATGCCATTGCTACAGGAGGATATAGTGAAGACATGAT
TCCAACTGTCGGTTTTAATATGCGGAAAGTTACAAAGGGAAATGTTACAA
TAAAGCTCTGGGACCTTGGAGGTCAACGGAGGTTTCGTACTATGTGGGAG
CGTTATTGTCGTGGGGTTTCTGCAATCTTATATGTAGTCGATGCCGCTGA
TAGAGACAGTGTTCCTATAGCTCGGAGTGAATTGCATGAGCTTCTGATGA
AACCTTCCTTGAGTGGAATCCCTTTGCTTGTTCTTGGCAACAAAATCGAC
AAGTCAGAAGCTCTTTCTAAGCAAGCTTTAGTGGATCAACTAGGCCTTGA
ATCAATTACTGATAGAGAGGTGTGCTGCTACATGATATCATGCAAGGACT
CTATAAACATAGATGCTGTCATTGATTGGCTTATCAAGCACTCTAAAACT
GCCAAATAAGCAAGCTTCAATGCTATTCGACTTTTATTTTCCTGAAGAAT
GATCGAGGCAAAGGAACGAAACAGTAAAGTAGAACAAGTGAAAGAAAACT
TCC
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