CN185093

Overview
NameCN185093
Unique NameCN185093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23
Identity = 58/166 (34.94%), Postives = 89/166 (53.61%), Query Frame = 3
Query:  135 LRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            L  LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR ELH +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL
Sbjct:    9 LSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 55/141 (39.01%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DRD V  AR ELH +L +  L    LLV  NK D   A++   + D+LGL S+  R
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR ELH +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR ELH +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 653
            N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ +  AR EL  +L +  L    LL+  NK D   A++   + D+LGL S+ +R              +   +DWL    K A
Sbjct:    7 NLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNA 180          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  129 NWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 653
            N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ +  AR EL  +L +  L    LL+  NK D   A++   + D+LGL S+ +R              +   +DWL    K A
Sbjct:    7 NLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNA 180          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 65/184 (35.33%), Postives = 96/184 (52.17%), Query Frame = 3
Query:  105 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            MG L SIL  L+S    QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQR+ R  W  Y      ++YV+D+ADR        EL ELL +  LSG+P+L+  NK D   A     + + L L +I DR       S      +   ++W+ K+    K
Sbjct:    1 MGLL-SILRKLKSAP-DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGQGVQDGMNWVCKNVNAKK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 60/174 (34.48%), Postives = 99/174 (56.90%), Query Frame = 3
Query:  114 LDSILNWLRSLFF-KQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            L S  + + SLF  K+E  + +IGL  AGK++L+  +  G      IPT+GFN+  +   N+++ +WD+GGQ + R +W+ Y  G +A+++VVD+ DR+ +   + E+  LL++  L G  +LV  NK D + A++   +V+ L L SI DR+      S   S  I    DW+
Sbjct:    9 LASFFSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVST-IPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWV 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 59/173 (34.10%), Postives = 91/173 (52.60%), Query Frame = 3
Query:  138 RSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +SLF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    K  K
Sbjct:   10 KSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 59/173 (34.10%), Postives = 91/173 (52.60%), Query Frame = 3
Query:  138 RSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            +SLF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  AR EL  +L +  L    LLV  NK D   A++   + D+LGL S+  R              +   +DWL    K  K
Sbjct:   10 KSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181          
The following BLAST results are available for this feature:
BLAST of CN185093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
ARF1_CHLRE1.282e-2334.94ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF_VIGUN1.675e-2339.01ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF2_ORYSJ1.675e-2334.97ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ1.675e-2334.97ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_LOCMI1.675e-2332.57ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME1.675e-2332.57ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARL3_XENLA2.857e-2335.33ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]
ARFJ_DICDI2.857e-2334.48ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF2_RAT2.857e-2334.10ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE2.857e-2334.10ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185093 ID=CN185093; Name=CN185093; organism=Citrus sinensis; type=EST; length=753bp
GAGGCTTGAGTTTCCTTTTGGCTCTTTCGCTACTTTCCCTCATTTCCCCG
TTTCCTTTTCCCCATTCGTAACCTCAGATTCAGTCTCTGCATCAGTTTTC
CCAAATGGGTTTTCTCGATTCTATTCTCAATTGGCTCCGCAGCTTATTCT
TTAAACAGGAAATGGAACTTTCTCTCATAGGCCTTCAGAATGCAGGAAAG
ACGTCTCTTGTTAATGCCATTGCTACAGGAGGATATAGTGAAGACATGAT
TCCAACTGTCGGTTTTAATATGCGGAAAGTTACAAAGGGAAATGTTACAA
TAAAGCTCTGGGACCTTGGAGGTCAACGGAGGTTTCGTACTATGTGGGAG
CGTTATTGTCGTGGGGTTTCTGCAATCTTATATGTAGTCGATGCCGCTGA
TAGAGACAGTGTTCCTATAGCTCGGAGTGAATTGCATGAGCTTCTGATGA
AACCTTCCTTGAGTGGAATCCCTTTGCTTGTTCTTGGCAACAAAATCGAC
AAGTCAGAAGCTCTTTCTAAGCAAGCTTTAGTGGATCAACTAGGCCTTGA
ATCAATTACTGATAGAGAGGTGTGCTGCTACATGATATCATGCAAGGACT
CTATAAACATAGATGCTGTCATTGATTGGCTTATCAAGCACTCTAAAACT
GCCAAATAAGCAAGCTTCAATGCTATTCGACTTTTATTTTCCTGAAGAAT
GATCGAGGCAAAGGAACGAAACAGTAAAGTAGAACAAGTGAAAGAAAACT
TCC
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