CN185093

Overview
NameCN185093
Unique NameCN185093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 54/169 (31.95%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  141 SLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 647
            +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ R R++W  Y R    +++V+D+ DR  +  AR  +  +L +  L     LV  NK D  EA+S   + ++LGL SI +R              +   ++WL  + K
Sbjct:   11 NLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLK 178          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 3
Query:  156 QEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC-CYMISCKDSINIDAVIDWLIK 638
            +++ L ++GL NAGKT+    I  G Y ED+ PTVGF+   + +G   + ++DLGG  R R +W+ Y      +++VVD++D + +   +  + E+L  P +SG P+LVL NK DK  AL +  +++ L LE + +   C C +  C         ID  IK
Sbjct:   20 RKVTLLMVGLDNAGKTATAKGIQ-GEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK 180          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 54/140 (38.57%), Postives = 90/140 (64.29%), Query Frame = 3
Query:  153 KQEMELSLIGLQNAGKTSLVNAIATGGYS-EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 566
            + E ++ ++GL +AGKT+L+  +   GY   + +PTVGFN+  + + G+V++ LWD+GGQ + R  W+ +  G   ++YV+D+ D   +P A +EL E+L  PS++ +PLLVL NK +  +ALS   + D+LGL+    R
Sbjct:   10 RAEAQVVMMGLDSAGKTTLLYRLK--GYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQSQLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEVPQALSLPEIRDRLGLQGFLGR 147          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.047e-21
Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ R R +W+ Y +    +++VVD+ DR+ +     EL ++L+   L    LL+  NK D   A++   + D+LGL+S+ +R              +   +DWL
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.047e-21
Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ R R +W+ Y +    +++VVD+ DR+ +     EL ++L+   L    LL+  NK D   A++   + D+LGL+S+ +R              +   +DWL
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.674e-21
Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  120 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            +I + L  LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ DRD +  A  EL  +L +  L    LLV  NK D   A++   L D+L L  + +R              +   +DWL
Sbjct:    4 TISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 51/163 (31.29%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ DR+ +     EL ++L +  L    LL+  NK D   A++   + D+LGL+S+ +R              +   +DWL
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 53/171 (30.99%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 656
            LF K+++ + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y      +++VVD+ DR+ +  AR  LH ++ +  L    +LV  NK D   A+S   + ++L L +I +R              +    DWL  H   AK
Sbjct:   12 LFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTT-IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLNNAK 181          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 52/163 (31.90%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  +  EL ++L +  L    LLV  NK D   A+    L D+LGL+++  R              +   +DWL
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWL 173          
BLAST of CN185093 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.780e-21
Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  144 LFFKQEMELSLIGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 632
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ DR+ V  +  EL ++L +  L    LLV  NK D   A+    L D+LGL+ +  R              +   +DWL
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 173          
The following BLAST results are available for this feature:
BLAST of CN185093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
ARF2_YEAST1.200e-2131.95ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
AR13B_HUMAN1.200e-2134.57ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
ARL11_BOVIN1.568e-2138.57ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARF4_PONAB2.047e-2131.90ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN2.047e-2131.90ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF2_DROME2.674e-2132.16ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF4_BOVIN4.561e-2131.29ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARF1_PLAFO4.561e-2130.99ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF5_CHICK5.957e-2131.90ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF5_RAT7.780e-2131.90ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185093 ID=CN185093; Name=CN185093; organism=Citrus sinensis; type=EST; length=753bp
GAGGCTTGAGTTTCCTTTTGGCTCTTTCGCTACTTTCCCTCATTTCCCCG
TTTCCTTTTCCCCATTCGTAACCTCAGATTCAGTCTCTGCATCAGTTTTC
CCAAATGGGTTTTCTCGATTCTATTCTCAATTGGCTCCGCAGCTTATTCT
TTAAACAGGAAATGGAACTTTCTCTCATAGGCCTTCAGAATGCAGGAAAG
ACGTCTCTTGTTAATGCCATTGCTACAGGAGGATATAGTGAAGACATGAT
TCCAACTGTCGGTTTTAATATGCGGAAAGTTACAAAGGGAAATGTTACAA
TAAAGCTCTGGGACCTTGGAGGTCAACGGAGGTTTCGTACTATGTGGGAG
CGTTATTGTCGTGGGGTTTCTGCAATCTTATATGTAGTCGATGCCGCTGA
TAGAGACAGTGTTCCTATAGCTCGGAGTGAATTGCATGAGCTTCTGATGA
AACCTTCCTTGAGTGGAATCCCTTTGCTTGTTCTTGGCAACAAAATCGAC
AAGTCAGAAGCTCTTTCTAAGCAAGCTTTAGTGGATCAACTAGGCCTTGA
ATCAATTACTGATAGAGAGGTGTGCTGCTACATGATATCATGCAAGGACT
CTATAAACATAGATGCTGTCATTGATTGGCTTATCAAGCACTCTAAAACT
GCCAAATAAGCAAGCTTCAATGCTATTCGACTTTTATTTTCCTGAAGAAT
GATCGAGGCAAAGGAACGAAACAGTAAAGTAGAACAAGTGAAAGAAAACT
TCC
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