CN185089

Overview
NameCN185089
Unique NameCN185089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185089_ssr49 microsatellite CN185089_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig899 contig Csv1_Contig899:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL4_MOUSE (Testis-specific Y-encoded-like protein 4 OS=Mus musculus GN=Tspyl4 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.248e-21
Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = 3
Query:  111 KSKMVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            K K VA  GK+       A +I+      ++ L+ I  EL  +N +A    L++E+K+  +R+    +R+ II++IP FW+TAF +HP L  ++S +D+ + RY+ +LEVE+ K  + G    F F  NPYF +  L K +      G +   +T I+W  G
Sbjct:  174 KEKKVAGGGKEET--RPRAPKINC-----MDSLEAIDQELSNVNAQADRAFLQLERKFGRMRRLHMQRRSFIIQNIPGFWVTAFRNHPQLSPMISGQDEDMMRYMINLEVEELKQPRVGCKFKFIFQSNPYFRNEGLVKEYE-RRSSGRVVSLSTPIRWHRG 327          

HSP 2 Score: 25.0238 bits (53), Expect = 4.248e-21
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  607 QMELNHEKKGNKRPLAGESFFTWFSD 684
            Q  ++  ++GN  P    SFF WFSD
Sbjct:  331 QAHIHRNREGNTIP----SFFNWFSD 352          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL1_PONAB (Testis-specific Y-encoded-like protein 1 OS=Pongo abelii GN=TSPYL1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.520e-20
Identity = 48/156 (30.77%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  138 KKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            ++ ++EEE  E+         L ++ L+ IQ EL+ +N +A     ++E K+  +R+   ++RN II++IP FW+TAF +HP L  ++  +D ++ RY+++LEV++ +  ++G    F F  NPYF +  + K +  +   G +   +T I W+ G
Sbjct:  207 EEDRLEEEAREEEGPWPLHEALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAFRNHPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYE-VRSSGRVVSLSTPIIWRRG 361          

HSP 2 Score: 23.0978 bits (48), Expect = 4.520e-20
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  661 SFFTWFSD 684
            SFFTWFSD
Sbjct:  377 SFFTWFSD 384          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL1_HUMAN (Testis-specific Y-encoded-like protein 1 OS=Homo sapiens GN=TSPYL1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.520e-20
Identity = 48/156 (30.77%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  138 KKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            ++ ++EEE  E+         L ++ L+ IQ EL+ +N +A     ++E K+  +R+   ++RN II++IP FW+TAF +HP L  ++  +D ++ RY+++LEV++ +  ++G    F F  NPYF +  + K +  +   G +   +T I W+ G
Sbjct:  206 EEDRLEEEAREEEGPWPLHEALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAFRNHPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYE-VRSSGRVVSLSTPIIWRRG 360          

HSP 2 Score: 23.0978 bits (48), Expect = 4.520e-20
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  661 SFFTWFSD 684
            SFFTWFSD
Sbjct:  376 SFFTWFSD 383          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL1_MOUSE (Testis-specific Y-encoded-like protein 1 OS=Mus musculus GN=Tspyl1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.534e-20
Identity = 46/130 (35.38%), Postives = 77/130 (59.23%), Query Frame = 3
Query:  207 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            L+ IQ EL+ +N +A      +EQK+  +R+   ++RN II++IP FW+TAF +HP L  ++   D ++ RY++SLEV++ +  K+G    F F  NPYF +  + K +  +   G +   +T I W+ G
Sbjct:  174 LEAIQLELDTVNAQADRAFQHLEQKFGRMRRHYLERRNYIIQNIPGFWMTAFRNHPQLSAMIRGRDAEMLRYVTSLEVKELRHPKTGCKFKFFFRRNPYFRNKLIVKEYE-VRSSGRVVSLSTPIIWRRG 302          

HSP 2 Score: 23.0978 bits (48), Expect = 4.534e-20
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  661 SFFTWFSD 684
            SFFTWFSD
Sbjct:  318 SFFTWFSD 325          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL5_MOUSE (Testis-specific Y-encoded-like protein 5 OS=Mus musculus GN=Tspyl5 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19
Identity = 55/176 (31.25%), Postives = 94/176 (53.41%), Query Frame = 3
Query:  126 ADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVKS*EERKQAAIG 653
            A  G++ K+ E++A       V S++ L+ +Q +LE +N +A    L + +K+ ++R    ++RN +I+SIP FW  AF +HP L   L+ +D+++  YL+ LEVE+    + GY I F F  NPYF++  L K +      G +   +  I+W  G  + +  K   E   +  G
Sbjct:  172 APVGEEKKMTEKHAGAGSPATVGSMDTLETVQLKLETMNAQADRAYLRLSRKFGQLRLHHLERRNLLIQSIPGFWGQAFQNHPQLSAFLNTKDKEVLSYLNRLEVEELGLARLGYKIKFYFGRNPYFQNKVLIKEYG-CGPSGQVVSRSAPIQWLPGHDLQSLSKENPENNGSFFG 346          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL5_HUMAN (Testis-specific Y-encoded-like protein 5 OS=Homo sapiens GN=TSPYL5 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19
Identity = 50/150 (33.33%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  147 KVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            K EE +A         S++ L+ +Q +LE +N +A    L + +K+ ++R    ++RN +I++IP FW  AF +HP L   L+ +++++  YL+SLEVE+    + GY I F F  NPYF++  L K +      G +   +T I+W  G
Sbjct:  185 KKEERDAGSGPPATEGSMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHPQLASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYG-CGPSGQVVSRSTPIQWLPG 333          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL1_BOVIN (Testis-specific Y-encoded-like protein 1 OS=Bos taurus GN=TSPYL1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.701e-19
Identity = 44/135 (32.59%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  192 LSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            L +  L+ IQ EL+ +N +A     ++E K+  +R+   ++RN II++IP FW+TAF +HP L  ++  +D ++ RY+++LEV++ +  ++G    F F  NPYF +  + K +  +   G +   +T I W+ G
Sbjct:  222 LRMNPLEAIQLELDSVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWVTAFRNHPQLSPMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYE-VRASGRVVSLSTPIIWRRG 355          

HSP 2 Score: 21.9422 bits (45), Expect = 3.701e-19
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  661 SFFTWFSD 684
            +FFTWFSD
Sbjct:  371 NFFTWFSD 378          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSYL3_HUMAN (Testis-specific Y-encoded-like protein 3 OS=Homo sapiens GN=TSPYL3 PE=5 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 3
Query:  192 LSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEGMGIP 608
            L ++ L+ IQ E E ++ +A    L +E+++  + +    +R+ II++IP FW+TAF++HP L  ++S  D+ +  YL +LEV + +  ++G    F F  NPYF++  + K +      G +   AT I+W  G   P
Sbjct:  144 LIVDPLEAIQWEAEAVSAQADRAYLPLERRFGRMHRLYLARRSFIIQNIPGFWVTAFLNHPQLSAMISPRDEDMLCYLMNLEVRELRHSRTGCKFKFRFWSNPYFQNKVIVKEYE-CRASGRVVSIATRIRWHWGQEPP 281          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSPY1_RAT (Testis-specific Y-encoded protein 1 OS=Rattus norvegicus GN=Tspy1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 42/130 (32.31%), Postives = 76/130 (58.46%), Query Frame = 3
Query:  198 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKW 587
            +E+L+ +Q EL  +N   S     ++ K +++R+P +D+R  II+ IP FW  A ++HP +  ++S +D+ +  Y+ SLEVE++        + F FS NPYF +  +TK +  L   G  +  +++I+W
Sbjct:  149 MEELELLQLELSFVNARCSGAFARIKAKVAKMRRPHFDRRKTIIQGIPGFWAKAMMNHPQMSSIISNQDEDLLSYMLSLEVEEYNPGLRMCRMMFFFSENPYFRNDIVTKDYQ-LSIIGYKESDSSTIEW 277          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: ASP_PLAFS (Aspartic acid-rich protein OS=Plasmodium falciparum (isolate fcm17 / Senegal) PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 43/129 (33.33%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  216 IQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            +Q ++E+++ + + + + ++++Y E +KP+++KR++II+ IP FW      HPAL +++  ED  I  +L  L+++D  D    Y ITF F      + E   L K  TF D++    +  T IKWKEG
Sbjct:   20 VQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTF-DNNQEKVVECTRIKWKEG 146          
The following BLAST results are available for this feature:
BLAST of CN185089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TSYL4_MOUSE4.248e-2133.33Testis-specific Y-encoded-like protein 4 OS=Mus mu... [more]
TSYL1_PONAB4.520e-2030.77Testis-specific Y-encoded-like protein 1 OS=Pongo ... [more]
TSYL1_HUMAN4.520e-2030.77Testis-specific Y-encoded-like protein 1 OS=Homo s... [more]
TSYL1_MOUSE4.534e-2035.38Testis-specific Y-encoded-like protein 1 OS=Mus mu... [more]
TSYL5_MOUSE2.144e-1931.25Testis-specific Y-encoded-like protein 5 OS=Mus mu... [more]
TSYL5_HUMAN2.800e-1933.33Testis-specific Y-encoded-like protein 5 OS=Homo s... [more]
TSYL1_BOVIN3.701e-1932.59Testis-specific Y-encoded-like protein 1 OS=Bos ta... [more]
TSYL3_HUMAN3.422e-1731.65Testis-specific Y-encoded-like protein 3 OS=Homo s... [more]
TSPY1_RAT2.897e-1632.31Testis-specific Y-encoded protein 1 OS=Rattus norv... [more]
ASP_PLAFS3.784e-1633.33Aspartic acid-rich protein OS=Plasmodium falciparu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006L16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185089 ID=CN185089; Name=CN185089; organism=Citrus sinensis; type=EST; length=690bp
CTGCAGGAATTCTGGCACGAGGAAGCCACTGGGGTTTTAGGCACTCGTCG
AGCGAGCGAGTTAGGGCTATTTAATTTTTATTTTATTTGTTTGTTATTTT
AATAGCTACCAAGAGCAAAATGGTGGCAGACAAGGGCAAAAAAACCAAAG
TTGAAGAAGAAAACGCAGAGCAAATTGACTCAGAACTTGTTCTTTCCATC
GAGAAACTCCAAGAGATCCAAGACGAGCTTGAAAAGATTAACGAAGAGGC
AAGCGAGAAAGTCTTGGAGGTTGAGCAGAAATACAGTGAGATACGCAAGC
CAGTCTATGATAAGCGAAATGATATCATCAAATCCATACCTGACTTCTGG
CTAACTGCCTTTATTAGTCATCCTGCTCTCGGTGAACTTTTGAGTGAAGA
GGATCAGAAGATATTCAGGTACTTGAGCTCTCTGGAAGTGGAGGATTTTA
AAGATGTCAAATCAGGATACTCCATCACATTTAACTTCTCCCCCAATCCC
TATTTTGAGGATACCAAACTTACCAAGACTTTCACCTTCCTTGATGATGA
TGGTTCAATGAAAATTACTGCTACATCAATCAAATGGAAAGAGGGCATGG
GCATACCAAATGGAGTTAAATCATGAGAAGAAAGGAAACAAGCGGCCATT
GGCGGGAGAAAGCTTCTTTACCTGGTTCAGTGATACCCAA
back to top