CN185089

Overview
NameCN185089
Unique NameCN185089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSPY1_HUMAN (Testis-specific Y-encoded protein 1 OS=Homo sapiens GN=TSPY1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 39/113 (34.51%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  195 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTF 533
            ++E+L  +Q ELE +N +A +      +K    RKP  D+R  +I+S+P FW     +HP +  L+++ED+ +  Y+ SLEVE+ K       I   F  NPYF++  +TK +
Sbjct:  108 ALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKHPVHLCKIMLFFRSNPYFQNKVITKEY 220          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSPY2_HUMAN (Testis-specific Y-encoded protein 2 OS=Homo sapiens GN=TSPY2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 39/113 (34.51%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  195 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTF 533
            ++E+L  +Q ELE +N +A +      +K    RKP  D+R  +I+S+P FW     +HP +  L+++ED+ +  Y+ SLEVE+ K       I   F  NPYF++  +TK +
Sbjct:  108 ALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEY 220          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: YGNB_SCHPO (Putative nucleosome assembly protein C2D10.11C OS=Schizosaccharomyces pombe GN=SPBC2D10.11c PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 41/142 (28.87%), Postives = 69/142 (48.59%), Query Frame = 3
Query:  198 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------------IPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDD 548
            I  L+ +Q + + I  E  +K+L++E KY +  +P++ +R +IIK                          IP+FWLT   +   +GE+++ ED+ + R LS +   +      GY + F F  N YF +  LTKT+ + DD
Sbjct:   95 ITALKGLQKDCDAIQYEFRQKMLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDELDHEEEIFQNNLPDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTKTYYYKDD 236          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: NAP1_DICDI (Probable nucleosome assembly protein OS=Dictyostelium discoideum GN=nap1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 43/167 (25.75%), Postives = 84/167 (50.30%), Query Frame = 3
Query:  180 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKWKEG 596
            +E++  +  L  +QD   ++ E+  +++LE+E+KY +  +P+ +KR +I+                            K IP FWL   + +  + +++ E D +   YL  +++    D +  YS+ F+FS NP+F +T ++KT    +D+   +I +T I WK+G
Sbjct:   21 TEVLDRVNALLTLQDTQNELTEQMEKEILEIEKKYLKKFQPLAEKRFEIVSGKVEPTKEDQQCKAPIQVENLKSVPTDKGIPKFWLHV-LQNTEVKDIIEECDIEALEYLVDIKIVQVGDAQD-YSLDFHFSENPFFTNTVISKTVKLEEDNELNEIVSTPINWKDG 185          
BLAST of CN185089 vs. ExPASy Swiss-Prot
Match: TSPY1_BOVIN (Testis-specific Y-encoded protein 1 OS=Bos taurus GN=TSPY1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 43/150 (28.67%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  150 VEEENAEQ----IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDTKLTKTFTFLDDDGSMKITATSIKW 587
            VEE+  E+     + + + +++ L  +Q EL    E+     ++  +K  + RK    +R+ II+ IP FW  A +SHP +  L+S++DQ    Y+  L+V+      S   + F+F  NPYF ++ + K + +LD  G     +T + W
Sbjct:  107 VEEQGQERPGGPCERQELDALQALAALQVELSSEREQNRRAYVQFMRKNHQRRKRHLARRSTIIQGIPGFWAKAIMSHPQVSVLISDQDQDFLGYMMDLKVQVRSHPPSRCKLIFSFRDNPYFLNSVIIKEY-YLDITGYRARRSTPVHW 255          
The following BLAST results are available for this feature:
BLAST of CN185089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TSPY1_HUMAN3.203e-1534.51Testis-specific Y-encoded protein 1 OS=Homo sapien... [more]
TSPY2_HUMAN4.184e-1534.51Testis-specific Y-encoded protein 2 OS=Homo sapien... [more]
YGNB_SCHPO8.723e-1328.87Putative nucleosome assembly protein C2D10.11C OS=... [more]
NAP1_DICDI1.488e-1225.75Probable nucleosome assembly protein OS=Dictyostel... [more]
TSPY1_BOVIN4.329e-1228.67Testis-specific Y-encoded protein 1 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185089 ID=CN185089; Name=CN185089; organism=Citrus sinensis; type=EST; length=690bp
CTGCAGGAATTCTGGCACGAGGAAGCCACTGGGGTTTTAGGCACTCGTCG
AGCGAGCGAGTTAGGGCTATTTAATTTTTATTTTATTTGTTTGTTATTTT
AATAGCTACCAAGAGCAAAATGGTGGCAGACAAGGGCAAAAAAACCAAAG
TTGAAGAAGAAAACGCAGAGCAAATTGACTCAGAACTTGTTCTTTCCATC
GAGAAACTCCAAGAGATCCAAGACGAGCTTGAAAAGATTAACGAAGAGGC
AAGCGAGAAAGTCTTGGAGGTTGAGCAGAAATACAGTGAGATACGCAAGC
CAGTCTATGATAAGCGAAATGATATCATCAAATCCATACCTGACTTCTGG
CTAACTGCCTTTATTAGTCATCCTGCTCTCGGTGAACTTTTGAGTGAAGA
GGATCAGAAGATATTCAGGTACTTGAGCTCTCTGGAAGTGGAGGATTTTA
AAGATGTCAAATCAGGATACTCCATCACATTTAACTTCTCCCCCAATCCC
TATTTTGAGGATACCAAACTTACCAAGACTTTCACCTTCCTTGATGATGA
TGGTTCAATGAAAATTACTGCTACATCAATCAAATGGAAAGAGGGCATGG
GCATACCAAATGGAGTTAAATCATGAGAAGAAAGGAAACAAGCGGCCATT
GGCGGGAGAAAGCTTCTTTACCTGGTTCAGTGATACCCAA
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