CN185083

Overview
NameCN185083
Unique NameCN185083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_CYAP4 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.401e-31
Identity = 70/141 (49.65%), Postives = 92/141 (65.25%), Query Frame = -2
Query:  321 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 743
            PLLCKEFI+  +Q+Y AR++GADAVLLIAA+L D D++Y  KI   LG+ AL+EVH   E+DRV                E F VD+  T  LL  +R + + Q+NI+VV ESGL+   D+  VQ AG KAVL+GES+VK+
Sbjct:  141 PLLCKEFIIYPYQMYLARSQGADAVLLIAAILSDQDLQYFLKIATSLGMAALIEVHTLTELDRVLNLEGVSLVGINNRNLENFTVDLQTTCDLL-SKRWDQLDQRNILVVSESGLYQAVDLQQVQTAGAKAVLIGESLVKK 280          

HSP 2 Score: 31.5722 bits (70), Expect = 1.401e-31
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTDEK+F+GSF  L  +R A
Sbjct:  116 SVLTDEKFFQGSFTYLNQIRQA 137          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SYNSC (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=trpC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.825e-31
Identity = 69/151 (45.70%), Postives = 97/151 (64.24%), Query Frame = -2
Query:  291 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 743
            PLLCKEF++  +Q++ AR  GADAVLLIAA+L D D+RY+ K    LGLT LVEVHD  EMDRV                 +FE D++ T++LL  +  + ++Q+ +++V ESGLF+  D+  VQ AG  AVLVGE++++Q D   G+  L
Sbjct:  142 PLLCKEFVLSPYQLFQARAAGADAVLLIAAILSDQDLRYLNKAAAALGLTVLVEVHDATEMDRVLSIGGFPLIGINNRDLTSFETDLATTERLLV-DFNDRLKQQGVLLVSESGLFSRADLDRVQAAGAGAVLVGEALMRQQDVEAGLVQL 291          

HSP 2 Score: 26.5646 bits (57), Expect = 1.825e-31
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD+ +F+G F+ L  VR A
Sbjct:  117 SVLTDKTFFQGGFDVLVEVRQA 138          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_PROM4 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=trpC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 8.900e-31
Identity = 70/153 (45.75%), Postives = 94/153 (61.44%), Query Frame = -2
Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            PLLCKEFI+  +QIY AR  GADAVLLIAA+L D D+ Y+ K+   LGLT LVEVHD  E+ RV                +TF  D+  TK++++ E  + I ++ +++V ESGLF   D+  V   G KAVLVGES+++Q D G  +  L G
Sbjct:  142 PLLCKEFIIQPYQIYQARVAGADAVLLIAAILSDQDLLYLRKVAISLGLTILVEVHDSNELKRVLDLEGFPLVGINNRDLKTFNTDLRTTKEVVK-EHKKRISEQEVLLVSESGLFNSADLEEVSSYGAKAVLVGESLMRQPDIGLALKNLQG 293          

HSP 2 Score: 26.5646 bits (57), Expect = 8.900e-31
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD+ +F+G FE L  VR
Sbjct:  117 SVLTDKSFFQGGFEVLVQVR 136          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_PROMT (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain NATL2A) GN=trpC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.509e-30
Identity = 67/153 (43.79%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            P+LCK+FI+  +Q+Y AR  GADA LLIAA+L D D++Y++K+ + LGLT LVEVHD  E++RV                ++F+ D+  TKKL E    + I++ +I +V ESGLF  +D+  V+  G  AVLVGES++ Q+D   G+  L G
Sbjct:  142 PILCKDFILYPYQLYQARAAGADAALLIAAILTDSDLKYLSKVAEHLGLTILVEVHDSEELERVLNINVFNLIGINNRNLKSFKTDLEVTKKLAENYANQ-IKENSITLVSESGLFNREDLDLVKSYGADAVLVGESLMSQEDILGGVKKLIG 293          

HSP 2 Score: 27.335 bits (59), Expect = 1.509e-30
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD+K+F+G F+ L  VR
Sbjct:  117 SVLTDKKFFQGGFDVLVEVR 136          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SYNR3 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain RCC307) GN=trpC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.559e-30
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = -2
Query:  315 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 743
            PLLCKEFI+  +Q+Y AR  GADAVLLIAA+L D DI Y+ K+ + LGL  L+EVHD  E++R                  +F+ D++ T + L    GE +RQ   ++V ESGLF+ DD+  VQ AG  AVLVGE++++Q D
Sbjct:  142 PLLCKEFILSPYQLYQARAAGADAVLLIAAILTDQDISYLLKVARSLGLQVLLEVHDAAELERALGFEGVQLIGINNRDLTSFDTDLATT-ETLTATYGEQLRQSGALLVSESGLFSRDDLDRVQSAGADAVLVGEALMRQSD 283          

HSP 2 Score: 27.335 bits (59), Expect = 2.559e-30
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD+++F+G FE L  VR
Sbjct:  117 SVLTDKRFFQGGFEVLVQVR 136          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_PROM1 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain NATL1A) GN=trpC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.649e-30
Identity = 66/153 (43.14%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            P+LCK+FI+  +Q+Y AR  GADA LLIAA+L D D++Y++K+ + LGLT LVEVHD  E++RV                ++F+ D+  TKKL +    + I++ +I +V ESGLF  +D+  V+  G  AVLVGES++ Q+D   G+  L G
Sbjct:  142 PILCKDFILYPYQLYQARAAGADAALLIAAILTDSDLKYLSKVAEHLGLTILVEVHDSEELERVLNINVFNLIGINNRNLKSFKTDLEVTKKLAKNYANQ-IKENSITLVSESGLFNREDLDLVKSYGADAVLVGESLMSQEDILGGVKKLVG 293          

HSP 2 Score: 27.335 bits (59), Expect = 5.649e-30
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD+K+F+G F+ L  VR
Sbjct:  117 SVLTDKKFFQGGFDVLVEVR 136          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SYNS9 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9902) GN=trpC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.356e-30
Identity = 66/153 (43.14%), Postives = 95/153 (62.09%), Query Frame = -2
Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            PLLCKEF++  +Q++ AR  GADAVLLIAA+L D D+RY+ K+ + LGL  LVEVHD +E++RV                 TFE D++ T+ L+   R + +     ++V ESGLF   D+  VQ AG +AVLVGE++++Q+D    +  L G
Sbjct:  142 PLLCKEFVLSPYQLFQARAAGADAVLLIAAILTDQDLRYLNKVAQSLGLDVLVEVHDAKELERVLAIGGFSLIGINNRDLATFETDLATTEVLVNQFR-DRLHLDTTVLVSESGLFARSDLDRVQAAGAEAVLVGEALMRQEDVESALHALVG 293          

HSP 2 Score: 25.7942 bits (55), Expect = 7.356e-30
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD+++F+G F+ L  VR
Sbjct:  117 SVLTDKQFFQGGFDVLVQVR 136          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_PROMA (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus GN=trpC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.114e-29
Identity = 65/153 (42.48%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            PLLCK+FI+  +QIY AR  GADA+LLIAA+L D D+ Y+ KI   LGL+ LVEVHD  E++RV                +TFE D++ T K+   E   +++++++++V ESG+FT +D+  V   G  AVL+GES+++Q D    +  L G
Sbjct:  142 PLLCKDFILHPYQIYQARASGADAILLIAAILSDQDLMYLNKIALSLGLSILVEVHDAAELNRVLRLGGFPLIGINNRDLKTFETDLTTTCKVAT-ECSNLLKEQDVLLVSESGIFTREDLQKVASFGASAVLIGESLMRQKDLTNALKELIG 293          

HSP 2 Score: 25.0238 bits (53), Expect = 2.114e-29
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD+ +F+G F+ L  VR
Sbjct:  117 SVLTDKTFFQGGFDVLADVR 136          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SYNPX (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain WH8102) GN=trpC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.753e-29
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = -2
Query:  291 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 743
            PLLCKEF++  +Q++ AR  GADAVLLIAA+L D D++Y+ K    LGL  LVEVHD  E++RV                 +FE D+S T++L+E   G+ ++ +  ++V ESGLF   D+  V+ AG  AVLVGE++++Q D    +T L
Sbjct:  142 PLLCKEFVLSPYQLFQARAAGADAVLLIAAILTDQDLQYLKKAAAALGLDVLVEVHDAAELERVLNLGGFPLIGINNRDLTSFETDLSTTEQLME-RFGDRLQDQGSLLVSESGLFDRSDLDRVKAAGADAVLVGEALMRQQDVQSALTNL 291          

HSP 2 Score: 26.5646 bits (57), Expect = 2.753e-29
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD+ +F+G F+ L  VR A
Sbjct:  117 SVLTDKTFFQGGFDVLVEVRQA 138          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SYNPW (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain WH7803) GN=trpC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.076e-29
Identity = 64/151 (42.38%), Postives = 93/151 (61.59%), Query Frame = -2
Query:  291 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 743
            PLLCK+FI+   Q+Y AR  GADA LLIAA+L D D+ Y+ K+   LGLT LVEVHD  EM+R+                 +FE D++ T+ L + +  + +R ++  +V ESGLF   D+  VQ +G  AVLVGE++++QD+  +G+  L
Sbjct:  142 PLLCKDFILSPHQLYQARAAGADAALLIAAILTDQDLAYLQKVAATLGLTVLVEVHDAAEMERILTLGGFPLIGINNRDLTSFETDLATTEALTQ-QFADRLRAQDAFLVSESGLFARADLNRVQRSGAGAVLVGEALMRQDNVEQGLRDL 291          

HSP 2 Score: 28.1054 bits (61), Expect = 6.076e-29
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = -1
Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD  +F+G F+ L AVR A
Sbjct:  117 SVLTDRTFFQGGFDVLVAVREA 138          
The following BLAST results are available for this feature:
BLAST of CN185083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
TRPC_CYAP41.401e-3149.65Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_SYNSC1.825e-3145.70Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_PROM48.900e-3145.75Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_PROMT1.509e-3043.79Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_SYNR32.559e-3046.15Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_PROM15.649e-3043.14Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_SYNS97.356e-3043.14Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_PROMA2.114e-2942.48Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_SYNPX2.753e-2943.05Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNPW6.076e-2942.38Indole-3-glycerol phosphate synthase OS=Synechococ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185083 ID=CN185083; Name=CN185083; organism=Citrus sinensis; type=EST; length=822bp
GAGGTTTTTTTTTAGCAGGTAAAATGCAGAGACCACAGTTCTCTTTTATT
ATTCTCAATCCATACAACAATACCATTACTATCAGATACAATACATTATT
CCAGTTCACTAGTGAAAGTTACAAAATTCAAAAGGAAAAGGAAATAAGGC
TATAGAATACAATAAGGGGGACGGTATATTTAATTGATCGATCAAAAGGT
GACTTTATTCATCTTCCATCTGAATAACATTCACCCGAACATTCTGAGAA
ACAATAAAATAGGAGCTCATACAGAAATGTCTTTTCCAAAAAGTCCAGTT
ATTCCCTTCCCGGGGTCGTCTTGCTTCACTATTGACTCCCCAACCAGAAC
AGCTTTAACACCAGCTTCTTGTACGTATGCGATATCATCGGGAGTAAATA
GCCCAGATTCACCAACCACAATTATGTTCTTTTGACGGATTATTTCACCA
CGCTCTCCTTCAAGAAGTTTCTTTGTGTTACTAATATCAACCTCAAACGT
CTCAAGGTTCCGATTGTTAATACCAATAAGTTCAATCCCCTCAATTCCAA
GAACACGATCCATTTCCCTCTCGTCATGAACCTCAACAAGTGCAGTCAAA
CCAAGCATCTTGCAGATCTTAGTCATGTATCTGATATCAAGATCAGGCAA
AACAGCAGCGATCAGAAGAACTGCATCTGCACCTTTAGTTCGGGCATAGT
AGATCTGCCATGCGTCTACAATGAATTCTTTGCACAATAGGGGGGCACTT
CACTCCTGCACTCCTTACAGCCTCCAAGTTTTCAAAGCTTCCCTTAAAAT
ACTTTTCATCTGTCAAAATACT
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