CN185083

Overview
NameCN185083
Unique NameCN185083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4485 contig Csv1_Contig4485:60..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_HAEIN (Tryptophan biosynthesis protein trpCF OS=Haemophilus influenzae GN=trpC PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.906e-11
Identity = 39/158 (24.68%), Postives = 73/158 (46.20%), Query Frame = -2
Query:  279 SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG-LFGKD 749
            S P+LCK+F++  +Q+Y AR    DA+LL+ +V+ D   R +  +   LG+  L E  +E E +R                     VD++   +L +     I    ++ ++ ESG++    I  +Q+      L+G S++   D    +   +FG++
Sbjct:  123 SQPVLCKDFMISEYQVYLARYYQVDAILLMLSVVNDETYRVLADLAHSLGMGVLTETSNEEEFERA-LALGAKIIGVNNRNLHDLTVDLNRVVELTKKYADCI--PADVRIISESGIYNHKQIHQLQKV-AHGFLIGSSLMGNQDLNNAVRSVIFGEN 276          

HSP 2 Score: 32.3426 bits (72), Expect = 2.906e-11
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTDEKYF+G+FE L  VR
Sbjct:  100 SVLTDEKYFQGNFEFLPLVR 119          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_SALTI (Tryptophan biosynthesis protein trpCF OS=Salmonella typhi GN=trpC PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.911e-11
Identity = 39/143 (27.27%), Postives = 68/143 (47.55%), Query Frame = -2
Query:  315 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 743
            P+LCK+FI+D +QIY AR   ADA LL+ +VL D   R ++ +   L +  L E+ ++ E +R                     +D++ T++L   + G       + V+ ESG+ T   +  +        L+G +++  DD
Sbjct:  110 PILCKDFIIDPYQIYLARYYQADACLLMLSVLDDEQYRQLSAVAHSLKMGVLTEISNDEERERA-IALGAKVVGINNRDLRDLSIDLNRTRQLAP-KLGH-----GVTVISESGINTYGQVRELSHF-ANGFLIGSALMAHDD 244          

HSP 2 Score: 30.8018 bits (68), Expect = 2.911e-11
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = -1
Query:  766 SILTDEKYFKGSFENLEAV 822
            S+LTDEKYF+GSF+ L  V
Sbjct:   85 SVLTDEKYFQGSFDFLPVV 103          
BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BUCAI (Tryptophan biosynthesis protein trpCF OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trpC PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.366e-11
Identity = 39/143 (27.27%), Postives = 72/143 (50.35%), Query Frame = -2
Query:  321 SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 749
            S P+LCK+F +D +Q+Y +R   ADA+LL+ +VL D+  + ++ I K L +  L EV++  E+ R                     +D++ T+ L        + +K+ I++ ESG+    +I  + +  V   L+G  ++ Q
Sbjct:  109 SQPVLCKDFFIDPYQVYLSRYYNADAILLMLSVLNDIQYKELSIIAKKLNMGILTEVNNIEELKRA-LKLNANIIGINNRNLHDLSIDLNRTRTL------SSLIKKDTIIISESGIKKYREIKELSKF-VNGFLIGSHLMSQ 243          

HSP 2 Score: 26.9498 bits (58), Expect = 6.366e-11
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = -1
Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTDEKYF G+   +  VR
Sbjct:   86 SVLTDEKYFHGNLNFINIVR 105          
The following BLAST results are available for this feature:
BLAST of CN185083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
TRPC_HAEIN2.906e-1124.68Tryptophan biosynthesis protein trpCF OS=Haemophil... [more]
TRPC_SALTI2.911e-1127.27Tryptophan biosynthesis protein trpCF OS=Salmonell... [more]
TRPC_BUCAI6.366e-1127.27Tryptophan biosynthesis protein trpCF OS=Buchnera ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185083 ID=CN185083; Name=CN185083; organism=Citrus sinensis; type=EST; length=822bp
GAGGTTTTTTTTTAGCAGGTAAAATGCAGAGACCACAGTTCTCTTTTATT
ATTCTCAATCCATACAACAATACCATTACTATCAGATACAATACATTATT
CCAGTTCACTAGTGAAAGTTACAAAATTCAAAAGGAAAAGGAAATAAGGC
TATAGAATACAATAAGGGGGACGGTATATTTAATTGATCGATCAAAAGGT
GACTTTATTCATCTTCCATCTGAATAACATTCACCCGAACATTCTGAGAA
ACAATAAAATAGGAGCTCATACAGAAATGTCTTTTCCAAAAAGTCCAGTT
ATTCCCTTCCCGGGGTCGTCTTGCTTCACTATTGACTCCCCAACCAGAAC
AGCTTTAACACCAGCTTCTTGTACGTATGCGATATCATCGGGAGTAAATA
GCCCAGATTCACCAACCACAATTATGTTCTTTTGACGGATTATTTCACCA
CGCTCTCCTTCAAGAAGTTTCTTTGTGTTACTAATATCAACCTCAAACGT
CTCAAGGTTCCGATTGTTAATACCAATAAGTTCAATCCCCTCAATTCCAA
GAACACGATCCATTTCCCTCTCGTCATGAACCTCAACAAGTGCAGTCAAA
CCAAGCATCTTGCAGATCTTAGTCATGTATCTGATATCAAGATCAGGCAA
AACAGCAGCGATCAGAAGAACTGCATCTGCACCTTTAGTTCGGGCATAGT
AGATCTGCCATGCGTCTACAATGAATTCTTTGCACAATAGGGGGGCACTT
CACTCCTGCACTCCTTACAGCCTCCAAGTTTTCAAAGCTTCCCTTAAAAT
ACTTTTCATCTGTCAAAATACT
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