CN185083 | Citrus Genome Database

Overview


Name	CN185083
Unique Name	CN185083
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	822

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4485	contig	Csv1_Contig4485:60..881.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_ACIBT (Indole-3-glycerol phosphate synthase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=trpC PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.232e-21
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = -2

Query:  270 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNT---KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 743
            P L K+F+VD + +  AR   AD +LLI A L D  +  M+K      L  LVEVHDE E++R                 +TF+VD++ T   KKLL   R         +++ ESG+ TPDD+  +QE  + + LVGES +KQ  P +  T LFG+  +V
Sbjct:  117 PALRKDFLVDPYNVVEARALHADCILLIVACLSDQQLEEMSKTAFEHQLDVLVEVHDEEELERALKLSEQCLLGVNNRNLKTFDVDLNTTIRLKKLLPASR---------LLITESGIATPDDVRMMQEHDIHSFLVGESFMKQPRPDQAFTALFGQPQTV 268

HSP 2 Score: 23.8682 bits (50), Expect = 6.232e-21
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = -1

Query:  760 SILTDEKYFKGSFENLEAVRS 822
            S+LTD  +F+G+ EN+   R+
Sbjct:   92 SVLTDVDFFQGADENIAIARN 112

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_ACIBS (Indole-3-glycerol phosphate synthase OS=Acinetobacter baumannii (strain SDF) GN=trpC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.232e-21
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = -2

Query:  270 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNT---KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 743
            P L K+F+VD + +  AR   AD +LLI A L D  +  M+K      L  LVEVHDE E++R                 +TF+VD++ T   KKLL   R         +++ ESG+ TPDD+  +QE  + + LVGES +KQ  P +  T LFG+  +V
Sbjct:  117 PALRKDFLVDPYNVVEARALHADCILLIVACLSDQQLEEMSKTAFEHQLDVLVEVHDEEELERALKLSEQCLLGVNNRNLKTFDVDLNTTIRLKKLLPASR---------LLITESGIATPDDVRMMQEHDIHSFLVGESFMKQPRPDQAFTALFGQPQTV 268

HSP 2 Score: 23.8682 bits (50), Expect = 6.232e-21
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = -1

Query:  760 SILTDEKYFKGSFENLEAVRS 822
            S+LTD  +F+G+ EN+   R+
Sbjct:   92 SVLTDVDFFQGADENIAIARN 112

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_ACIBC (Indole-3-glycerol phosphate synthase OS=Acinetobacter baumannii (strain ACICU) GN=trpC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.232e-21
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = -2

Query:  270 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNT---KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 743
            P L K+F+VD + +  AR   AD +LLI A L D  +  M+K      L  LVEVHDE E++R                 +TF+VD++ T   KKLL   R         +++ ESG+ TPDD+  +QE  + + LVGES +KQ  P +  T LFG+  +V
Sbjct:  117 PALRKDFLVDPYNVVEARALHADCILLIVACLSDQQLEEMSKTAFEHQLDVLVEVHDEEELERALKLSEQCLLGVNNRNLKTFDVDLNTTIRLKKLLPASR---------LLITESGIATPDDVRMMQEHDIHSFLVGESFMKQPRPDQAFTALFGQPQTV 268

HSP 2 Score: 23.8682 bits (50), Expect = 6.232e-21
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = -1

Query:  760 SILTDEKYFKGSFENLEAVRS 822
            S+LTD  +F+G+ EN+   R+
Sbjct:   92 SVLTDVDFFQGADENIAIARN 112

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_ACIB5 (Indole-3-glycerol phosphate synthase OS=Acinetobacter baumannii (strain AB0057) GN=trpC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.232e-21
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = -2

Query:  270 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNT---KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 743
            P L K+F+VD + +  AR   AD +LLI A L D  +  M+K      L  LVEVHDE E++R                 +TF+VD++ T   KKLL   R         +++ ESG+ TPDD+  +QE  + + LVGES +KQ  P +  T LFG+  +V
Sbjct:  117 PALRKDFLVDPYNVVEARALHADCILLIVACLSDQQLEEMSKTAFEHQLDVLVEVHDEEELERALKLSEQCLLGVNNRNLKTFDVDLNTTIRLKKLLPASR---------LLITESGIATPDDVRMMQEHDIHSFLVGESFMKQPRPDQAFTALFGQPQTV 268

HSP 2 Score: 23.8682 bits (50), Expect = 6.232e-21
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = -1

Query:  760 SILTDEKYFKGSFENLEAVRS 822
            S+LTD  +F+G+ EN+   R+
Sbjct:   92 SVLTDVDFFQGADENIAIARN 112

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_ACIAC (Indole-3-glycerol phosphate synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.234e-21
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = -2

Query:  288 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 743
            P+L K+F+VDA+QIY +R  GADA+LLIAA L D  +     I   LG+ ALVEVHD  E+DR                  TFEV +  T  L +          + ++V ESG+ TP D+  +++A V A LVGE+ ++  +PG  +  LF
Sbjct:  121 PVLRKDFMVDAYQIYESRAMGADAILLIAACLEDAQMAEFEAIAHSLGMAALVEVHDGAELDRA-LKLRTPLVGINNRNLRTFEVSLDTTVSLRKAV------PSDRLLVAESGILTPQDVKTLRDADVHAFLVGEAFMRAQEPGAALAKLF 265

HSP 2 Score: 22.3274 bits (46), Expect = 6.234e-21
Identity = 8/22 (36.36%), Postives = 16/22 (72.73%), Query Frame = -1

Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD ++F+G  + L+  R++
Sbjct:   96 SVLTDRQFFQGQPDYLKQARAS 117

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_PHEZH (Indole-3-glycerol phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=trpC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.117e-21
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = -2

Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            P L KEF+VD WQ+  +R+ GADA+L+I A++ D+    +    + LG+ ALVEVHDE EM R                  TFEVD+S T++L        +     ++V ESG+FTP D+A ++  G +A+LVGES+++Q D       L G
Sbjct:  112 PCLRKEFLVDPWQVAESRSLGADAILVILAMVDDVLAAELMAEAQRLGMDALVEVHDEAEMARA-GALGADLIGVNNRNLRTFEVDLSTTERL------ATMAPAGALLVTESGIFTPADVARLERCGAQAMLVGESLMRQADVTAATRALLG 257

HSP 2 Score: 21.9422 bits (45), Expect = 8.117e-21
Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = -1

Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD   F+G    L A RSA
Sbjct:   87 SVLTDGPSFQGDDSYLAAARSA 108

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BACC1 (Indole-3-glycerol phosphate synthase OS=Bacillus cereus (strain ATCC 10987) GN=trpC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.120e-21
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = -2

Query:  327 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 758
            +E S PLLCK+FI+D  QI  A   GAD +LLI A LP   ++ +       GL A+VE+HDE E++ +                +TFEVD+  T+KL     G+ + ++ ++ + ESG+ + +DI  V+ AG K VLVGE+++
Sbjct:  100 EESSIPLLCKDFIIDKIQIDRAYEAGADIILLIVAALPKEKLKELYSYVLEKGLEAIVEIHDEEELE-IAIELNPHVIGINNRNLKTFEVDLGQTEKL-----GKRLNEEKLLWISESGIHSKEDIIRVKRAGAKGVLVGEALM 237

HSP 2 Score: 28.1054 bits (61), Expect = 8.120e-21
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD ++FKGSF +L+  R
Sbjct:   80 SVLTDGQFFKGSFYDLQTAR 99

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BACC3 (Indole-3-glycerol phosphate synthase OS=Bacillus cereus (strain 03BB102) GN=trpC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.056e-20
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -2

Query:  327 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 758
            +E S PLLCK+FI+D  QI  A   GAD +LLI A L    ++ +       GL A+VEVHDE+E++ +                +TFEVD+S T+KL     G+ + ++ ++ + ESG+ + +DI  V+ AG K VLVGE+++
Sbjct:  100 EESSIPLLCKDFIIDKIQIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEKELE-IAIQLNPHVIGINNRNLKTFEVDLSQTEKL-----GKRLNEEKLLWISESGIHSKEDIICVKRAGAKGVLVGEALM 237

HSP 2 Score: 28.1054 bits (61), Expect = 1.056e-20
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD ++FKGSF +L+  R
Sbjct:   80 SVLTDGQFFKGSFYDLQTAR 99

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BACAH (Indole-3-glycerol phosphate synthase OS=Bacillus thuringiensis (strain Al Hakam) GN=trpC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.056e-20
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -2

Query:  327 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 758
            +E S PLLCK+FI+D  QI  A   GAD +LLI A L    ++ +       GL A+VEVHDE+E++ +                +TFEVD+S T+KL     G+ + ++ ++ + ESG+ + +DI  V+ AG K VLVGE+++
Sbjct:  100 EESSIPLLCKDFIIDKIQIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEKELE-IAIQLNPHVIGINNRNLKTFEVDLSQTEKL-----GKRLNEEKLLWISESGIHSKEDIICVKRAGAKGVLVGEALM 237

HSP 2 Score: 28.1054 bits (61), Expect = 1.056e-20
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD ++FKGSF +L+  R
Sbjct:   80 SVLTDGQFFKGSFYDLQTAR 99

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BACHK (Indole-3-glycerol phosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=trpC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.374e-20
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -2

Query:  327 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 758
            +E S PLLCK+FI+D  QI  A   GAD +LLI A L    ++ +       GL A+VEVHDE+E++ +                +TFEVD+S T+KL     G+ + ++ ++ + ESG+ + +DI  V+ AG K VLVGE+++
Sbjct:  100 EESSIPLLCKDFIIDKIQIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEQELE-IAIQLNPHVIGINNRNLKTFEVDLSQTEKL-----GKRLNEEKLLWISESGIHSKEDIIRVKRAGAKGVLVGEALM 237

HSP 2 Score: 28.1054 bits (61), Expect = 1.374e-20
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD ++FKGSF +L+  R
Sbjct:   80 SVLTDGQFFKGSFYDLQTAR 99

The following BLAST results are available for this feature:

BLAST of CN185083 vs. ExPASy Swiss-Prot

BLAST of CN185083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353


Match Name	E-value	Identity	Description
TRPC_ACIBT	6.232e-21	37.27	Indole-3-glycerol phosphate synthase OS=Acinetobac...	[more]
TRPC_ACIBS	6.232e-21	37.27	Indole-3-glycerol phosphate synthase OS=Acinetobac...	[more]
TRPC_ACIBC	6.232e-21	37.27	Indole-3-glycerol phosphate synthase OS=Acinetobac...	[more]
TRPC_ACIB5	6.232e-21	37.27	Indole-3-glycerol phosphate synthase OS=Acinetobac...	[more]
TRPC_ACIAC	6.234e-21	38.82	Indole-3-glycerol phosphate synthase OS=Acidovorax...	[more]
TRPC_PHEZH	8.117e-21	38.56	Indole-3-glycerol phosphate synthase OS=Phenylobac...	[more]
TRPC_BACC1	8.120e-21	37.50	Indole-3-glycerol phosphate synthase OS=Bacillus c...	[more]
TRPC_BACC3	1.056e-20	38.19	Indole-3-glycerol phosphate synthase OS=Bacillus c...	[more]
TRPC_BACAH	1.056e-20	38.19	Indole-3-glycerol phosphate synthase OS=Bacillus t...	[more]
TRPC_BACHK	1.374e-20	38.19	Indole-3-glycerol phosphate synthase OS=Bacillus t...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0006L09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185083 ID=CN185083; Name=CN185083; organism=Citrus sinensis; type=EST; length=822bp
GAGGTTTTTTTTTAGCAGGTAAAATGCAGAGACCACAGTTCTCTTTTATT
ATTCTCAATCCATACAACAATACCATTACTATCAGATACAATACATTATT
CCAGTTCACTAGTGAAAGTTACAAAATTCAAAAGGAAAAGGAAATAAGGC
TATAGAATACAATAAGGGGGACGGTATATTTAATTGATCGATCAAAAGGT
GACTTTATTCATCTTCCATCTGAATAACATTCACCCGAACATTCTGAGAA
ACAATAAAATAGGAGCTCATACAGAAATGTCTTTTCCAAAAAGTCCAGTT
ATTCCCTTCCCGGGGTCGTCTTGCTTCACTATTGACTCCCCAACCAGAAC
AGCTTTAACACCAGCTTCTTGTACGTATGCGATATCATCGGGAGTAAATA
GCCCAGATTCACCAACCACAATTATGTTCTTTTGACGGATTATTTCACCA
CGCTCTCCTTCAAGAAGTTTCTTTGTGTTACTAATATCAACCTCAAACGT
CTCAAGGTTCCGATTGTTAATACCAATAAGTTCAATCCCCTCAATTCCAA
GAACACGATCCATTTCCCTCTCGTCATGAACCTCAACAAGTGCAGTCAAA
CCAAGCATCTTGCAGATCTTAGTCATGTATCTGATATCAAGATCAGGCAA
AACAGCAGCGATCAGAAGAACTGCATCTGCACCTTTAGTTCGGGCATAGT
AGATCTGCCATGCGTCTACAATGAATTCTTTGCACAATAGGGGGGCACTT
CACTCCTGCACTCCTTACAGCCTCCAAGTTTTCAAAGCTTCCCTTAAAAT
ACTTTTCATCTGTCAAAATACT