CN185083 | Citrus Genome Database

Overview


Name	CN185083
Unique Name	CN185083
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	822

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4485	contig	Csv1_Contig4485:60..881.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BACC0 (Indole-3-glycerol phosphate synthase OS=Bacillus cereus (strain AH820) GN=trpC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.374e-20
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -2

Query:  327 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 758
            +E S PLLCK+FI+D  QI  A   GAD +LLI A L    ++ +       GL A+VEVHDE+E++ +                +TFEVD+S T+KL     G+ + ++ ++ + ESG+ + +DI  V+ AG K VLVGE+++
Sbjct:  100 EESSIPLLCKDFIIDKIQIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEQELE-IAIQLNPHVIGINNRNLKTFEVDLSQTEKL-----GKRLNEEKLLWISESGIHSKEDIIRVKRAGAKGVLVGEALM 237

HSP 2 Score: 28.1054 bits (61), Expect = 1.374e-20
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD ++FKGSF +L+  R
Sbjct:   80 SVLTDGQFFKGSFYDLQTAR 99

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BACAN (Indole-3-glycerol phosphate synthase OS=Bacillus anthracis GN=trpC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.374e-20
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -2

Query:  327 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 758
            +E S PLLCK+FI+D  QI  A   GAD +LLI A L    ++ +       GL A+VEVHDE+E++ +                +TFEVD+S T+KL     G+ + ++ ++ + ESG+ + +DI  V+ AG K VLVGE+++
Sbjct:  100 EESSIPLLCKDFIIDKIQIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEQELE-IAIQLNPHVIGINNRNLKTFEVDLSQTEKL-----GKRLNEEKLLWISESGIHSKEDIIRVKRAGAKGVLVGEALM 237

HSP 2 Score: 28.1054 bits (61), Expect = 1.374e-20
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD ++FKGSF +L+  R
Sbjct:   80 SVLTDGQFFKGSFYDLQTAR 99

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BACAC (Indole-3-glycerol phosphate synthase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=trpC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.374e-20
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -2

Query:  327 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 758
            +E S PLLCK+FI+D  QI  A   GAD +LLI A L    ++ +       GL A+VEVHDE+E++ +                +TFEVD+S T+KL     G+ + ++ ++ + ESG+ + +DI  V+ AG K VLVGE+++
Sbjct:  100 EESSIPLLCKDFIIDKIQIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEQELE-IAIQLNPHVIGINNRNLKTFEVDLSQTEKL-----GKRLNEEKLLWISESGIHSKEDIIRVKRAGAKGVLVGEALM 237

HSP 2 Score: 28.1054 bits (61), Expect = 1.374e-20
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD ++FKGSF +L+  R
Sbjct:   80 SVLTDGQFFKGSFYDLQTAR 99

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BACAA (Indole-3-glycerol phosphate synthase OS=Bacillus anthracis (strain A0248) GN=trpC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.374e-20
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = -2

Query:  327 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 758
            +E S PLLCK+FI+D  QI  A   GAD +LLI A L    ++ +       GL A+VEVHDE+E++ +                +TFEVD+S T+KL     G+ + ++ ++ + ESG+ + +DI  V+ AG K VLVGE+++
Sbjct:  100 EESSIPLLCKDFIIDKIQIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEQELE-IAIQLNPHVIGINNRNLKTFEVDLSQTEKL-----GKRLNEEKLLWISESGIHSKEDIIRVKRAGAKGVLVGEALM 237

HSP 2 Score: 28.1054 bits (61), Expect = 1.374e-20
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD ++FKGSF +L+  R
Sbjct:   80 SVLTDGQFFKGSFYDLQTAR 99

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_PETMO (Indole-3-glycerol phosphate synthase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=trpC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.374e-20
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = -2

Query:  288 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 743
            P+L K+FI+D  QIY +   GA+ +LLIA++L   +I    KI K +GL A+VEVH+ +E+ +V                  F + + NT+KLLE E  ++ ++++  V+ ESG+    DI Y++   V  VL+GE+++K++DP   I  LF
Sbjct:   96 PILRKDFIIDPIQIYQSLFLGANVILLIASILTKKEISNFLKISKDIGLEAIVEVHNHQELTKV-LDTETEILGINNRDLSDFSLSLRNTEKLLE-ELEKLGKRRDFYVISESGIKEKSDIDYLRSLEVDGVLIGEALMKENDPVLKIGELF 245

HSP 2 Score: 28.4906 bits (62), Expect = 1.374e-20
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            SILTDEKYF+GS   L+ +R
Sbjct:   71 SILTDEKYFQGSTNILKELR 90

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_MAGSM (Indole-3-glycerol phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.785e-20
Identity = 53/158 (33.54%), Postives = 89/158 (56.33%), Query Frame = -2

Query:  276 SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDI 749
            + P+L K+F+  ++Q+  AR+ GADA+LLI AVL     + +    + LG+  LVEVHDERE+++                 +TF  DI  + +L          +K  + + ESGL TP+D+A + EAG+ + L+GES+++  +PG  +  L G+++
Sbjct:  117 ACPVLRKDFLYHSYQVVEARSLGADAILLIMAVLETPQAQELEAAARELGMDVLVEVHDERELEQA-HELKTPLMGVNNRNLKTFVTDIETSFRLAAR------MEKGRLAISESGLNTPEDLARLNEAGIFSFLIGESLMRGGEPGGALAQLLGREV 267

HSP 2 Score: 26.9498 bits (58), Expect = 1.785e-20
Identity = 14/27 (51.85%), Postives = 18/27 (66.67%), Query Frame = -1

Query:  742 SILTDEKYFKGSFENLEAVRSAGVKCP 822
            S LTDE +F G    L+A+R+A V CP
Sbjct:   94 SCLTDETFFMGHDAFLQAIRAA-VACP 119

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_VARPS (Indole-3-glycerol phosphate synthase OS=Variovorax paradoxus (strain S110) GN=trpC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.785e-20
Identity = 60/152 (39.47%), Postives = 84/152 (55.26%), Query Frame = -2

Query:  288 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 743
            P+L K+FIVDA+Q+Y +R  GADAVLLIAA L D  ++    I + LG+  LVEVHD  E++R                   FEV I  T  LL           + + V ESG+ T +D+A ++ AGV A LVGE+ ++  +PG+ +  LF
Sbjct:  121 PVLRKDFIVDAYQVYESRAMGADAVLLIAACLDDAQMKDYEAIARGLGMAVLVEVHDAAELERA-LKLKTPLIGVNNRNLRNFEVSIQATIDLLPR------LPADRLAVTESGIATREDVATLRAAGVHAFLVGEAFMRAKEPGEALAALF 265

HSP 2 Score: 23.8682 bits (50), Expect = 1.785e-20
Identity = 8/22 (36.36%), Postives = 17/22 (77.27%), Query Frame = -1

Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD+++F+G  + L+  R++
Sbjct:   96 SVLTDKQFFQGGVDYLKQARAS 117

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_BORPD (Indole-3-glycerol phosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=trpC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.323e-20
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = -2

Query:  285 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 743
            P+L K+F++D +Q+  AR  GAD VLLI A L    +R +  +   LG+  LVEVHD +E+D +                 TFE  + NT  LL     +I   K +I   ESG+ +P+D+  ++   V A LVGE+ ++ +DPG  +  L G
Sbjct:  117 PVLRKDFVIDPYQVISARAMGADCVLLIVAALAPSQLRELETLAMELGMDVLVEVHDAKELD-IALSLKTPLLGINNRNLRTFETSLQNTLNLLP----QIPAGKRVIT--ESGILSPEDVKLMRSHQVHAFLVGEAFMRAEDPGVELARLMG 262

HSP 2 Score: 29.6462 bits (65), Expect = 2.323e-20
Identity = 14/33 (42.42%), Postives = 24/33 (72.73%), Query Frame = -1

Query:  727 SILTDEKYFKGSFENLEAVRSAGVKCP-PIVQR 822
            S+LTD ++F+GS +NL   R+A   CP P++++
Sbjct:   92 SVLTDVQFFQGSHDNLRRARAA---CPLPVLRK 121

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_ACIAD (Indole-3-glycerol phosphate synthase OS=Acinetobacter sp. (strain ADP1) GN=trpC PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 3.019e-20
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = -2

Query:  285 QE*SAPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNT---KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 758
            Q  S P L K+F++D + +  AR   AD +LLI A L D  +  M+K      L  LVEVHDE+E++R                 +TF+VD++ +   KKLL+  R         ++V ESG+ TP D+  +QE  + + LVGES +KQ  P +  T LFG
Sbjct:  112 QHCSLPALRKDFLIDPYNVVEARALQADCILLIVACLSDQQLEEMSKTAFEYDLDVLVEVHDEQELERALKLSEQCLLGVNNRNLKTFDVDLNTSLRLKKLLDPSR---------LLVTESGIATPQDVQLMQEHDIHSFLVGESFMKQPRPDQAFTELFG 263

HSP 2 Score: 23.483 bits (49), Expect = 3.019e-20
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = -1

Query:  763 SILTDEKYFKGSFENLEAVR 822
            S+LTD  +F+G+ EN+   R
Sbjct:   92 SVLTDVDFFQGADENIAIAR 111

[Close]

BLAST of CN185083 vs. ExPASy Swiss-Prot
Match: TRPC_STRM5 (Indole-3-glycerol phosphate synthase OS=Stenotrophomonas maltophilia (strain R551-3) GN=trpC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.021e-20
Identity = 52/152 (34.21%), Postives = 88/152 (57.89%), Query Frame = -2

Query:  288 PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXETFEVDISNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 743
            P+L K+F++DA+Q+Y AR  GAD +LLI A L D  +  ++++   LG+  LVEVHD  E++R                  TFEV +  T  + +         ++ ++V ESG+  P D+A +++AG+ + LVGE+ ++ ++PG+G+  LF
Sbjct:  117 PVLRKDFVIDAYQVYEARVLGADCILLIVAALDDTQLATLSELAMSLGMDVLVEVHDIDELERA-LQVPAPMIGINNRNLRTFEVSLQTTLDMQKAV------PRDRLLVTESGILGPQDVALMRDAGIHSFLVGEAFMRVEEPGEGLRQLF 261

HSP 2 Score: 21.557 bits (44), Expect = 3.021e-20
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = -1

Query:  757 SILTDEKYFKGSFENLEAVRSA 822
            S+LTD  +F+G+   L+  R A
Sbjct:   92 SVLTDVDFFQGADAYLQQARDA 113

The following BLAST results are available for this feature:

BLAST of CN185083 vs. ExPASy Swiss-Prot

BLAST of CN185083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353


Match Name	E-value	Identity	Description
TRPC_BACC0	1.374e-20	38.19	Indole-3-glycerol phosphate synthase OS=Bacillus c...	[more]
TRPC_BACAN	1.374e-20	38.19	Indole-3-glycerol phosphate synthase OS=Bacillus a...	[more]
TRPC_BACAC	1.374e-20	38.19	Indole-3-glycerol phosphate synthase OS=Bacillus a...	[more]
TRPC_BACAA	1.374e-20	38.19	Indole-3-glycerol phosphate synthase OS=Bacillus a...	[more]
TRPC_PETMO	1.374e-20	36.18	Indole-3-glycerol phosphate synthase OS=Petrotoga ...	[more]
TRPC_MAGSM	1.785e-20	33.54	Indole-3-glycerol phosphate synthase OS=Magnetococ...	[more]
TRPC_VARPS	1.785e-20	39.47	Indole-3-glycerol phosphate synthase OS=Variovorax...	[more]
TRPC_BORPD	2.323e-20	35.29	Indole-3-glycerol phosphate synthase OS=Bordetella...	[more]
TRPC_ACIAD	3.019e-20	36.65	Indole-3-glycerol phosphate synthase OS=Acinetobac...	[more]
TRPC_STRM5	3.021e-20	34.21	Indole-3-glycerol phosphate synthase OS=Stenotroph...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0006L09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185083 ID=CN185083; Name=CN185083; organism=Citrus sinensis; type=EST; length=822bp
GAGGTTTTTTTTTAGCAGGTAAAATGCAGAGACCACAGTTCTCTTTTATT
ATTCTCAATCCATACAACAATACCATTACTATCAGATACAATACATTATT
CCAGTTCACTAGTGAAAGTTACAAAATTCAAAAGGAAAAGGAAATAAGGC
TATAGAATACAATAAGGGGGACGGTATATTTAATTGATCGATCAAAAGGT
GACTTTATTCATCTTCCATCTGAATAACATTCACCCGAACATTCTGAGAA
ACAATAAAATAGGAGCTCATACAGAAATGTCTTTTCCAAAAAGTCCAGTT
ATTCCCTTCCCGGGGTCGTCTTGCTTCACTATTGACTCCCCAACCAGAAC
AGCTTTAACACCAGCTTCTTGTACGTATGCGATATCATCGGGAGTAAATA
GCCCAGATTCACCAACCACAATTATGTTCTTTTGACGGATTATTTCACCA
CGCTCTCCTTCAAGAAGTTTCTTTGTGTTACTAATATCAACCTCAAACGT
CTCAAGGTTCCGATTGTTAATACCAATAAGTTCAATCCCCTCAATTCCAA
GAACACGATCCATTTCCCTCTCGTCATGAACCTCAACAAGTGCAGTCAAA
CCAAGCATCTTGCAGATCTTAGTCATGTATCTGATATCAAGATCAGGCAA
AACAGCAGCGATCAGAAGAACTGCATCTGCACCTTTAGTTCGGGCATAGT
AGATCTGCCATGCGTCTACAATGAATTCTTTGCACAATAGGGGGGCACTT
CACTCCTGCACTCCTTACAGCCTCCAAGTTTTCAAAGCTTCCCTTAAAAT
ACTTTTCATCTGTCAAAATACT