CN185082

Overview
NameCN185082
Unique NameCN185082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.774e-81
Identity = 147/179 (82.12%), Postives = 153/179 (85.47%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRE ISIHIGQAGIQVGNACWELYCLEHGI  DG M SD TVG   DAFNTFFSETGAGKHVPRA+F+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+YPSPQVST
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.317e-81
Identity = 145/179 (81.01%), Postives = 153/179 (85.47%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRE IS+HIGQ GIQVGNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAV +DLEPTV DE+RTG YRQLFHPEQ+ISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGF+ FH+V                 VDYGKKSKL FTVYPSPQVST
Sbjct:    1 MREVISVHIGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPTVCDEIRTGTYRQLFHPEQIISGKEDAANNFARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLCFTVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.317e-81
Identity = 143/179 (79.89%), Postives = 153/179 (85.47%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIHIGQAGIQ GNACWELYCLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAV++DLEPTV DEVRTG YRQL+HPEQ+ISGKEDAANN+ARGHYTIGKEIVDL LDRIRKLADNCTGLQGFLVFHA                  VDYG+KSKL F + P+PQV+T
Sbjct:    1 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVAT 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.026e-81
Identity = 141/179 (78.77%), Postives = 155/179 (86.59%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDG M SDKTVGGGDD+F+TFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST
Sbjct:    1 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGHMPSDKTVGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.026e-81
Identity = 138/179 (77.09%), Postives = 156/179 (87.15%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEP+V+DEVR+G YRQLFHPEQLI+GKEDAANN+ARGHYT+GKE++DL LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F+VYP+PQVST
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.952e-81
Identity = 145/179 (81.01%), Postives = 153/179 (85.47%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRE ISIH+GQAGIQ+GNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR VFLDLEPTV+DEVRTG YR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVST
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.952e-81
Identity = 145/179 (81.01%), Postives = 153/179 (85.47%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRE ISIH+GQAGIQ+GNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR VFLDLEPTV+DEVRTG YR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVST
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 6.740e-81
Identity = 139/179 (77.65%), Postives = 154/179 (86.03%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRA+F+DLEP+VIDEVRTG YRQLFHPEQLISGKEDAANN+ARGHYTIGKEI+D  LDR+RKLAD CTGLQGFLVFH+                  VDYGKKSKL F +YP+PQVST
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAIFVDLEPSVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDQVLDRMRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 6.740e-81
Identity = 142/179 (79.33%), Postives = 153/179 (85.47%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRE ISIHIGQAG QVGNACWELYCLEHGI PDGQM SDK+VGGGDDAFNTFFSET +GKHVPRA++LDLEPTVIDE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDLCLDR+RKLAD C+GLQGFLVFH+V                 VDYGKKSKL F VYPSPQVST
Sbjct:    1 MREIISIHIGQAGAQVGNACWELYCLEHGINPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIYLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVST 179
[Close]
BLAST of CN185082 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 6.740e-81
Identity = 141/179 (78.77%), Postives = 154/179 (86.03%), Query Frame = 3 
Query:   33 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 569
            MRE +SIHIGQAG QVGNACWELYCLEHGI+PDGQM SDK+VGGGDDAFNTFFSET +GKHVPRA+FLDLEPTVIDE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYT+GKE+VDLCLDR+RKLAD C+GLQGFLVFH+V                 VDYGKKSKL F VYPSPQVST
Sbjct:    1 MREILSIHIGQAGAQVGNACWELYCLEHGIKPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIFLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVST 179
The following BLAST results are available for this feature:
BLAST of CN185082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
TBA1_HORVU1.774e-8182.12Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA_EUPVA2.317e-8181.01Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBA2_PELFA2.317e-8179.89Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA2_DROME3.026e-8178.77Tubulin alpha-2 chain OS=Drosophila melanogaster G... [more]
TBA1_APLCA3.026e-8177.09Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]
TBA_TOXGO3.952e-8181.01Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA3.952e-8181.01Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA_NOTVI6.740e-8177.65Tubulin alpha chain OS=Notophthalmus viridescens P... [more]
TBAN_PHYPO6.740e-8179.33Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBAE_PHYPO6.740e-8178.77Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006L08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185082 ID=CN185082; Name=CN185082; organism=Citrus sinensis; type=EST; length=570bp
GAGGCTCAAATCTCTAACAAAATCACACAAGAATGAGAGAATGCATCTCA
ATTCACATCGGCCAGGCCGGTATCCAGGTTGGTAATGCCTGCTGGGAGCT
CTATTGCCTCGAACATGGCATTCAGCCTGATGGGCAAATGTTAAGTGACA
AAACAGTCGGAGGCGGAGATGATGCTTTCAACACATTCTTCAGTGAGACC
GGCGCCGGAAAGCACGTGCCACGCGCCGTGTTTTTGGACCTTGAACCAAC
TGTAATCGATGAAGTGAGGACTGGCGCCTACCGTCAGTTATTTCACCCGG
AGCAACTCATTAGCGGCAAAGAAGATGCTGCTAACAACTTTGCCAGAGGT
CACTACACAATTGGGAAAGAGATTGTGGATTTGTGCCTTGATAGGATCAG
GAAGTTAGCTGATAACTGTACCGGTCTACAAGGGTTCCTCGTGTTCCACG
CGGTTGGTGGAGGAACAGGATCCGGGCTCGGGTCTTTGCTCCTTGAGAGG
CTGTCTGTTGATTACGGCAAGAAATCGAAACTGGGATTTACCGTTTACCC
TTCACCTCAAGTTTCAACCT
back to top