CN185081

Overview
NameCN185081
Unique NameCN185081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185081_ssr699 microsatellite CN185081_ssr699:699..710. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3493 contig Csv1_Contig3493:67..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SUMO2_DANRE (Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.075e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  428 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 685
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLTMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SMO2B_XENLA (Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-B PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.075e-18
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = -2
Query:  425 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 685
            D KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    3 DDKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  425 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 667
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SMO3L_DANRE (Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  425 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 667
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.004e-16
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  428 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 685
            DKK  +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:   15 DKK--EGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.004e-16
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  428 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 685
            DKK  +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:   15 DKK--EGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.311e-16
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  428 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 670
            D + +I +KV GQD NEV FR+K  T + KL  +Y DR  V +NS+ FLFDGRR+  + TP  LEMED D I+    Q GG
Sbjct:   10 DNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SUMO4_PIG (Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  428 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 685
            D+KP      + + HINLKV GQDG+   F+I+R T L KLM AYC+RQ + +  I F  DG+ +    TP +LE+ED D ID +  QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRFRVDGQPINETHTPAQLELEDEDTIDVLQQQTGG 93          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SUMO1_SPETR (Small ubiquitin-related modifier 1 OS=Spermophilus tridecemlineatus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  428 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 688
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CN185081 vs. ExPASy Swiss-Prot
Match: SUMO1_RAT (Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  428 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 688
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
The following BLAST results are available for this feature:
BLAST of CN185081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO2_DANRE4.075e-1851.65Small ubiquitin-related modifier 2 OS=Danio rerio ... [more]
SMO2B_XENLA4.075e-1851.09Small ubiquitin-related modifier 2-B OS=Xenopus la... [more]
SUMO3_DANRE5.322e-1854.32Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]
SMO3L_DANRE5.322e-1854.32Small ubiquitin-related modifier 3-like OS=Danio r... [more]
SUMO1_XENTR1.004e-1650.00Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA1.004e-1650.00Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO_CAEEL1.311e-1650.62Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO4_PIG1.712e-1647.25Small ubiquitin-related modifier 4 OS=Sus scrofa G... [more]
SUMO1_SPETR1.712e-1647.13Small ubiquitin-related modifier 1 OS=Spermophilus... [more]
SUMO1_RAT1.712e-1647.13Small ubiquitin-related modifier 1 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006L07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185081 ID=CN185081; Name=CN185081; organism=Citrus sinensis; type=EST; length=809bp
GAGGAGAAAGTAGATGTTCTTTTTTCTGTTTACGGAGAAGAACATAGGAG
TTTATCAAGAAGAGAGAACAGGGAGAATGATACGCCGTGGTTCCTCAACC
CCAGGAACCAGATACAGGGTACATCACGCGCAATTACTGACACTGAGCCA
TATCTTTCCTGCTATATTTCCAACCCTAAGTTCCCCATCTGGCAAGAAAA
ACCTATAGAAGTGATTGGCATACAAAGCCATTCATTTTCAAGGGGAAAAC
ACTAACTACATAAATTATTGATAATAAACCATGACTTAAATTCAAGTTAA
TTATAAGATCCAAGTCATCATTTACAGTAATATTTCCATAGATATAGGCT
AATTTAAAAAACTCAAACATCAAGTCCGCCAGCGATGCTCAAAATATTTC
AAACTGCAGCTAACCGCTTCCAAGCGCACCTCCAGTCTGATGCAGCATTG
CATCAATTTCATCTCCATCCTCCATCTCAAGCTCATCTGGAGTCTGCTCT
CCTCGGAGTCTCCGCCCATCAAACAAGAAAGCAATAGAGTTTAACTCCAC
CGACTGCCGATCACAGTAGGCATTCATGAGCTTTTTCAACTGGGTGCTTC
GCTTAATTCTAAAAAACACCTCATTGCCATCCTGGCCCTTGACTTTGAGG
TTAATGTGCGCCGACTGATCGACGGGCTTCTTGTCCTCCTCCTGACCACC
GCCGCCGCCGCCACCGGTCGCTGACATCCTTACAGGTTCTTAGAATTGAA
TTTTACCCTCTCTTTGTTTCTGCGCCTCTGGTTAGGGTTTTGTCGTCCCC
TCTGCGACT
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