CN185064

Overview
NameCN185064
Unique NameCN185064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_BURVG (50S ribosomal protein L2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 3
Query:   18 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEH 632
            I  + KG G     H HH      +R +DF      +   V  + +DP R A +A V +        ++   IA +G+  GQ +  G +A +  GN LP+R+IP G  +  +E   G    +AR++G  A++++   +    +V+L SG  + +   CRA IG+V     + + + KAG N +   R      P VRGVAMNPV+H
Sbjct:   49 ITTRHKGGG-----HKHH------YRIVDFRRTKDGIPAKVERLEYDPNRSANIALVLYADG-----ERRYIIAPKGLTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGVYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIR------PTVRGVAMNPVDH 230          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_BREBN (50S ribosomal protein L2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 69/211 (32.70%), Postives = 96/211 (45.50%), Query Frame = 3
Query:   21 RAQRKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 632
            +A R   G +   H    H RK    +R +DF      + G VA I +DP R A +A + +        +K   IA   +  G  +  G  A + +GN LP+  IP G  + N+E   G  G L RA+G  A ++    D +   V+L SG  + I + CRA IGQV   G  +  LL  G A       R+ W    P VRG  MNP +H
Sbjct:   40 KAGRNNQGRITVRHQGGGHKRK----YRIIDFKRNKDGIIGRVATIEYDPNRSANIALINYADG-----EKRYIIAPHNLKVGDQIVSGADADIKIGNALPMEKIPVGTTIHNIELKPGKGGQLVRAAGTSAQLLGR--DGEFVIVRLSSGETRRIHNVCRATIGQV---GNLDHELLNIGKA------GRSRWLGIRPTVRGSVMNPNDH 230          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_BACTN (50S ribosomal protein L2 OS=Bacteroides thetaiotaomicron GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 63/188 (33.51%), Postives = 92/188 (48.94%), Query Frame = 3
Query:   69 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            HRK     R +DF      +  VV  I +DP R A +A + +        +K   IA  G+  G  +  G+ A   +GN LP+++IP G V+ N+E   G    L R++G++A + S   +     +KLPSG  + I S C+A IG V       +   KAG +  + R  RN     RGV MNPV+H
Sbjct:   58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLYYADG-----EKRYIIAPNGLQVGATLMSGETAAPEIGNTLPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLERSGKAGRSRWQGRRPRN-----RGVVMNPVDH 230          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_BACP2 (50S ribosomal protein L2 OS=Bacillus pumilus (strain SAFR-032) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 65/186 (34.95%), Postives = 92/186 (49.46%), Query Frame = 3
Query:   87 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 632
            Q+R +DF      + G VA I +DP R A +A V +        +K   +A +G+  G  V  G +A +  GN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +H
Sbjct:   61 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVNYADG-----EKRYILAPKGIQVGTEVTSGPEADIKPGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRATIGQV---GNEQHELINIGKA------GRSRWKGVRPTVRGSVMNPNDH 230          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_VIBFM (50S ribosomal protein L2 OS=Vibrio fischeri (strain MJ11) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 3
Query:   90 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            +R +DF      +  VV  + +DP R A +A V F        ++   IA +G+  G  V  G  A +  GN LP+R+IP G+ V  VE   G    +AR++G YA II+   D     ++L SG  + + S  RA IG+V       + L KAG         R   P VRGVAMNPV+H
Sbjct:   62 YRLIDFKRTKDGIPAVVERLEYDPNRSANIALVLFADG-----ERRYIIAPKGIQAGDTVQSGVDAPIKAGNCLPLRNIPVGSTVHCVELKPGKGAQIARSAGAYAQIIAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRW-----RGVRPTVRGVAMNPVDH 230          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_VIBF1 (50S ribosomal protein L2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 3
Query:   90 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            +R +DF      +  VV  + +DP R A +A V F        ++   IA +G+  G  V  G  A +  GN LP+R+IP G+ V  VE   G    +AR++G YA II+   D     ++L SG  + + S  RA IG+V       + L KAG         R   P VRGVAMNPV+H
Sbjct:   62 YRLIDFKRTKDGIPAVVERLEYDPNRSANIALVLFADG-----ERRYIIAPKGIQAGDTVQSGVDAPIKAGNCLPLRNIPVGSTVHCVELKPGKGAQIARSAGAYAQIIAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRW-----RGVRPTVRGVAMNPVDH 230          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 63/204 (30.88%), Postives = 98/204 (48.04%), Query Frame = 3
Query:   27 QRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            ++KG  +       HR G  +  +R +DF      + G V  + +DP R A +  V +        +K   +A   +  G  +  G +A   +GN +P+  IP G VV NVE + G  G + RA+G  A +++   +     +KLPSG  ++I   C A IGQ+         L KAG +  ++  +R   PKVRG  MNPV+H
Sbjct:   45 RKKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDG-----EKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDH 236          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 70/211 (33.18%), Postives = 106/211 (50.24%), Query Frame = 3
Query:   21 RAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEII---HDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEH 632
            R  RK   +V+   T  HR G     +R +DF +RN +  G+ A+++   +DP R   +A+V + +       K   +   G+  G  V  G  A + VGN LP+ +IP G +V N+E + G  G L R++G  A I++   +     ++LPSG ++ +   CRA +GQV         + KAG   H  FR      P VRGV MNPV+H
Sbjct:   36 RLTRKAGRNVYGRITVRHRGGGHKRMYRIIDF-KRNEF-DGIPAKVVSIEYDPNRTCRIAKVVYANG-----AKRYILHPVGLNVGDTVVSGPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDH 231          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_SHEFN (50S ribosomal protein L2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 59/181 (32.60%), Postives = 89/181 (49.17%), Query Frame = 3
Query:   90 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            +R +DF      +   V  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN  P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+H
Sbjct:   62 YRIVDFKRNKDGIPAKVERLEYDPNRTAHIALVLYADG-----ERRYILAAKGMKAGDPIQSGLDAEIKTGNARPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDH 230          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 63/205 (30.73%), Postives = 100/205 (48.78%), Query Frame = 3
Query:   36 GAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 632
            G  +  K  + HR G  +  +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+H
Sbjct:   42 GRNNQGKITSWHRGGGHKKLYRIIDFKRNKIDVSAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDH 230          
The following BLAST results are available for this feature:
BLAST of CN185064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BURVG1.396e-1731.0750S ribosomal protein L2 OS=Burkholderia vietnamie... [more]
RL2_BREBN1.396e-1732.7050S ribosomal protein L2 OS=Brevibacillus brevis (... [more]
RL2_BACTN1.396e-1733.5150S ribosomal protein L2 OS=Bacteroides thetaiotao... [more]
RL2_BACP21.396e-1734.9550S ribosomal protein L2 OS=Bacillus pumilus (stra... [more]
RL2_VIBFM1.824e-1735.3650S ribosomal protein L2 OS=Vibrio fischeri (strai... [more]
RL2_VIBF11.824e-1735.3650S ribosomal protein L2 OS=Vibrio fischeri (strai... [more]
RL2_SYNJB1.824e-1730.8850S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]
RL2_SYMTH1.824e-1733.1850S ribosomal protein L2 OS=Symbiobacterium thermo... [more]
RL2_SHEFN1.824e-1732.6050S ribosomal protein L2 OS=Shewanella frigidimari... [more]
RL2_RICPU1.824e-1730.7350S ribosomal protein L2 OS=Rickettsia peacockii (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185064 ID=CN185064; Name=CN185064; organism=Citrus sinensis; type=EST; length=654bp
GAGGAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTC
TTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCT
CGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTA
TTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCAC
CCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTAT
GTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTG
GTAATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAAC
GTTGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGA
TTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCA
AGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATG
ATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGC
TGGGAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGG
TGCGTGGTGTGGCCATGAACCCAGTGGAGCATTCCTCATGGGAGGAGGTA
ACCA
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