CN185064
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_BURVG (50S ribosomal protein L2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17 Identity = 64/206 (31.07%), Postives = 101/206 (49.03%), Query Frame = 3 Query: 18 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAG-NAYHKFRVKRNCWPKVRGVAMNPVEH 632 I + KG G H HH +R +DF + V + +DP R A +A V + ++ IA +G+ GQ + G +A + GN LP+R+IP G + +E G +AR++G A++++ + +V+L SG + + CRA IG+V + + + KAG N + R P VRGVAMNPV+H Sbjct: 49 ITTRHKGGG-----HKHH------YRIVDFRRTKDGIPAKVERLEYDPNRSANIALVLYADG-----ERRYIIAPKGLTVGQQLMSGSEAPIRAGNTLPIRNIPVGTTIHCIEMLPGKGAQMARSAGTSAMLLAR--EGVYAQVRLRSGEIRRVHIECRATIGEVGNEEHSLRQIGKAGANRWRGIR------PTVRGVAMNPVDH 230
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_BREBN (50S ribosomal protein L2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17 Identity = 69/211 (32.70%), Postives = 96/211 (45.50%), Query Frame = 3 Query: 21 RAQRKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 632 +A R G + H H RK +R +DF + G VA I +DP R A +A + + +K IA + G + G A + +GN LP+ IP G + N+E G G L RA+G A ++ D + V+L SG + I + CRA IGQV G + LL G A R+ W P VRG MNP +H Sbjct: 40 KAGRNNQGRITVRHQGGGHKRK----YRIIDFKRNKDGIIGRVATIEYDPNRSANIALINYADG-----EKRYIIAPHNLKVGDQIVSGADADIKIGNALPMEKIPVGTTIHNIELKPGKGGQLVRAAGTSAQLLGR--DGEFVIVRLSSGETRRIHNVCRATIGQV---GNLDHELLNIGKA------GRSRWLGIRPTVRGSVMNPNDH 230
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_BACTN (50S ribosomal protein L2 OS=Bacteroides thetaiotaomicron GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17 Identity = 63/188 (33.51%), Postives = 92/188 (48.94%), Query Frame = 3 Query: 69 HRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632 HRK R +DF + VV I +DP R A +A + + +K IA G+ G + G+ A +GN LP+++IP G V+ N+E G L R++G++A + S + +KLPSG + I S C+A IG V + KAG + + R RN RGV MNPV+H Sbjct: 58 HRK---VIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLYYADG-----EKRYIIAPNGLQVGATLMSGETAAPEIGNTLPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSR--EGKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLERSGKAGRSRWQGRRPRN-----RGVVMNPVDH 230
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_BACP2 (50S ribosomal protein L2 OS=Bacillus pumilus (strain SAFR-032) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17 Identity = 65/186 (34.95%), Postives = 92/186 (49.46%), Query Frame = 3 Query: 87 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 632 Q+R +DF + G VA I +DP R A +A V + +K +A +G+ G V G +A + GN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +H Sbjct: 61 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVNYADG-----EKRYILAPKGIQVGTEVTSGPEADIKPGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRATIGQV---GNEQHELINIGKA------GRSRWKGVRPTVRGSVMNPNDH 230
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_VIBFM (50S ribosomal protein L2 OS=Vibrio fischeri (strain MJ11) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17 Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 90 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632 +R +DF + VV + +DP R A +A V F ++ IA +G+ G V G A + GN LP+R+IP G+ V VE G +AR++G YA II+ D ++L SG + + S RA IG+V + L KAG R P VRGVAMNPV+H Sbjct: 62 YRLIDFKRTKDGIPAVVERLEYDPNRSANIALVLFADG-----ERRYIIAPKGIQAGDTVQSGVDAPIKAGNCLPLRNIPVGSTVHCVELKPGKGAQIARSAGAYAQIIAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRW-----RGVRPTVRGVAMNPVDH 230
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_VIBF1 (50S ribosomal protein L2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17 Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 90 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632 +R +DF + VV + +DP R A +A V F ++ IA +G+ G V G A + GN LP+R+IP G+ V VE G +AR++G YA II+ D ++L SG + + S RA IG+V + L KAG R P VRGVAMNPV+H Sbjct: 62 YRLIDFKRTKDGIPAVVERLEYDPNRSANIALVLFADG-----ERRYIIAPKGIQAGDTVQSGVDAPIKAGNCLPLRNIPVGSTVHCVELKPGKGAQIARSAGAYAQIIAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRW-----RGVRPTVRGVAMNPVDH 230
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17 Identity = 63/204 (30.88%), Postives = 98/204 (48.04%), Query Frame = 3 Query: 27 QRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632 ++KG + HR G + +R +DF + G V + +DP R A + V + +K +A + G + G +A +GN +P+ IP G VV NVE + G G + RA+G A +++ + +KLPSG ++I C A IGQ+ L KAG + ++ +R PKVRG MNPV+H Sbjct: 45 RKKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDG-----EKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDH 236
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17 Identity = 70/211 (33.18%), Postives = 106/211 (50.24%), Query Frame = 3 Query: 21 RAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEII---HDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEH 632 R RK +V+ T HR G +R +DF +RN + G+ A+++ +DP R +A+V + + K + G+ G V G A + VGN LP+ +IP G +V N+E + G G L R++G A I++ + ++LPSG ++ + CRA +GQV + KAG H FR P VRGV MNPV+H Sbjct: 36 RLTRKAGRNVYGRITVRHRGGGHKRMYRIIDF-KRNEF-DGIPAKVVSIEYDPNRTCRIAKVVYANG-----AKRYILHPVGLNVGDTVVSGPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDH 231
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_SHEFN (50S ribosomal protein L2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17 Identity = 59/181 (32.60%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 90 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632 +R +DF + V + +DP R A +A V + ++ +AA+GM G + G A + GN P+R+IP G+VV VE G +AR++G Y +++ D ++L SG + +P CRA G+V + L KAG + R P VRGVAMNPV+H Sbjct: 62 YRIVDFKRNKDGIPAKVERLEYDPNRTAHIALVLYADG-----ERRYILAAKGMKAGDPIQSGLDAEIKTGNARPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDH 230
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17 Identity = 63/205 (30.73%), Postives = 100/205 (48.78%), Query Frame = 3 Query: 36 GAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 632 G + K + HR G + +R +DF + +V I +DP R A +A + + + +A + + G V + A + +GN LP++ IP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C+A IG ++ + L KAG RN W P VRGVAMNPV+H Sbjct: 42 GRNNQGKITSWHRGGGHKKLYRIIDFKRNKIDVSAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDH 230 The following BLAST results are available for this feature:
BLAST of CN185064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185064 ID=CN185064; Name=CN185064; organism=Citrus sinensis; type=EST; length=654bpback to top |