CN185064

Overview
NameCN185064
Unique NameCN185064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11638 contig Csv1_Contig11638:67..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.988e-41
Identity = 95/210 (45.24%), Postives = 123/210 (58.57%), Query Frame = 3
Query:    6 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MGR I  QR+G G S F++ +H  K     R++   E +  + G V +I HDP R APLA V F    R      L +A EG+  G  +  G  A +  GN +P+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   V+LPSG  + +   CRA IG VAGGGRTEKP +KAGN +HK + +   WP+VRGVAMN V+H
Sbjct:    1 MGRRILGQRRGRGTSTFRAPSHRYKADLSHRNV---EESDLVTGEVVDIEHDPARSAPLADVQFDDGDR-----RLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDH 200          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.533e-40
Identity = 94/210 (44.76%), Postives = 122/210 (58.10%), Query Frame = 3
Query:    6 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MGR I+ QR+G G   F++ +H  K     + L+  +    + G +  I HDP R APLA + F    R      L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE + GD G  ARASG  A +++H  D D   V+LPSG  K +   CRA IG VAGGGRTEKP +KAGN YHK + +   +P+VRGVAMN V+H
Sbjct:    1 MGRRIQGQRRGRGGPTFRAPSHRYKAELSHKKLEDVDT---ITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTH--DRDVAVVQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAVDH 200          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.533e-40
Identity = 99/210 (47.14%), Postives = 122/210 (58.10%), Query Frame = 3
Query:    6 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MG+ I  QR+G  S VFK+  H    PA++  LD  +     K VV +++HDPGR  PLA+V       +        A EGMY GQ +  G  A  + GN+LPV  IPEG  V N+E   GD G   RASG YAVI+        T+V+LPSG    +P+  RAMIG +AGGGR EKPLLKAG AY+K+  K   WPKVRGVAMN   H
Sbjct:    1 MGKRIIPQRRGKASPVFKTPDHIHVAPARYPLLDPSKT---YKAVVEDLVHDPGRWVPLAQVKLETGLVFYVP-----AVEGMYAGQIIEIGPGAKPVNGNILPVGMIPEGMQVVNIEKRPGDGGKFVRASGTYAVIVGRA--GGKTQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFH 200          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_UNCMA (50S ribosomal protein L2P OS=Uncultured methanogenic archaeon RC-I GN=rpl2p PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.826e-40
Identity = 87/209 (41.63%), Postives = 122/209 (58.37%), Query Frame = 3
Query:    6 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MG+ + +Q +G GS     T  R          FG+    ++G++ E++HDP R  P+ RV F +      ++ L +A EG+  G  + CG  A +  GN LP+  IPEG  +CN+E   GD G  AR+SG YA+I++H  +   T V++PSG  K +   CRA IG VAGGGRTEKP ++AGN ++K   K   WP VRGVAMN V+H
Sbjct:    1 MGKRLMSQNRGKGSPTYRATSSRFKADLEHIKTFGDET--IEGIITEVVHDPARNCPIIRVKFGNG-----EERLILAPEGVGVGDKIACGISAEIKPGNTLPLSEIPEGCAICNIESQPGDGGAFARSSGVYAIIVAH--EGKKTVVQMPSGEIKRLNPKCRATIGVVAGGGRTEKPFVRAGNKWYKMANKATKWPVVRGVAMNAVDH 200          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.938e-40
Identity = 96/211 (45.50%), Postives = 126/211 (59.72%), Query Frame = 3
Query:    6 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MG+ +  QR+G GS +++S       PA++  L        L+G V E++HDPGR  PLA +   +        E +I AAEGMY GQ +  G  A  + GN+LPV  IPEG  V N+E   GD G L RA G YA+I+  +   + T ++LPSG  K +P+  RA IG VAG GR EKPLLKAG AY+K+  K + WP+VRGVAMN V H
Sbjct:    1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLT----PVTLRGRVVELVHDPGRWVPLAHIVLENG------DEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNH 199          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.214e-39
Identity = 92/210 (43.81%), Postives = 124/210 (59.05%), Query Frame = 3
Query:    6 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MG+ I  QR+G  GS F+S +  R GP ++  L  G  +G  KG V +I+H+PG  AP+A++   +   +        AAEG+Y GQ V  GK A+   GN++ +  IPEG ++ NVE   GD G  ARA G YAV+I   P+ + T ++LPSG    + S  RA +G VAGGGR EKP LKAG  YH+ R K   +P VRG AM+P  H
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPL--GVISG--KGYVVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAH 201          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.214e-39
Identity = 89/210 (42.38%), Postives = 125/210 (59.52%), Query Frame = 3
Query:    6 MGRVIRAQRKGAGSVFKSHTHHR-KGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MG+ +  QR+G G+       HR K   ++RS D  E+ G +KG+V +I+HDP R AP+A V F +      +K+  +A E +     + CG  A +  GN LP+  IPEG  + ++E+  GD G   R+SG YA +I+H  D + + V+LPSG  K +   CRA IG VAGGGR EKP LKAGN +H ++ K   +  VRGVAMN V+H
Sbjct:    1 MGKRLIIQRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITH--DANQSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDH 203          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.891e-39
Identity = 91/210 (43.33%), Postives = 122/210 (58.10%), Query Frame = 3
Query:    6 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MG+ I  QR+G  GS F+S +  R GP ++     G      +G+V EI+H+PG  AP+A++   +   +        AAEG+Y GQ +  G  A   VGNVLP+  IPEG +V NVE   GD G  AR+ G YA++I   P+ + T V+LPSG    + +  RA IG VAGGGR EKP +KAG  YH+ R K   +P VRG AM+P  H
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPNISG------RGIVVEILHEPGLNAPVAKIRMENGVEFFNY-----AAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAH 199          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.932e-39
Identity = 91/210 (43.33%), Postives = 126/210 (60.00%), Query Frame = 3
Query:    6 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MG+ +R QR G G+  +++  H R  P ++ S +  + +   +G V E+ HDPGR  PLA +   +   +        AAEGMYTGQ V  G  A  + GN+LP+ +IPEG  + NVE   GD G LAR+ G YA+++  +   ++  ++LPSG  K + +  RA IG  AG GR EKPLLKAGNAY+K++ K   WP VRGVAMN V H
Sbjct:    1 MGKRLRVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFW-----IPAAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILVGKS--GNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNH 203          
BLAST of CN185064 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.413e-39
Identity = 88/210 (41.90%), Postives = 121/210 (57.62%), Query Frame = 3
Query:    6 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 632
            MG+ I  QR+G  GS F+S +  R GP ++  L+     GY    V E++H+PG  AP+AR+       +        AAEG+Y GQ +  G  AT   GN++ +  IPEG ++ NVE   GD G  AR+SG YAV++   P+ + T ++LPSG    + +  RA +G VAGGGR EKP LKAG  YH+ R K   +P VRG AM+P  H
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYLPLEATSGRGY----VVELLHEPGLNAPVARIVTESGAEFFNY-----AAEGLYVGQVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAH 201          
The following BLAST results are available for this feature:
BLAST of CN185064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_NATPD8.988e-4145.2450S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_HALLT1.533e-4044.7650S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_DESK11.533e-4047.1450S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_UNCMA5.826e-4041.6350S ribosomal protein L2P OS=Uncultured methanogen... [more]
RL2_HYPBU9.938e-4045.5050S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_PYRAE2.214e-3943.8150S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_METS32.214e-3942.3850S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_PYRCJ2.891e-3943.3350S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_IGNH44.932e-3943.3350S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]
RL2_PYRAR8.413e-3941.9050S ribosomal protein L2P OS=Pyrobaculum arsenatic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006K20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185064 ID=CN185064; Name=CN185064; organism=Citrus sinensis; type=EST; length=654bp
GAGGAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTC
TTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCT
CGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTA
TTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCAC
CCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTAT
GTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTG
GTAATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAAC
GTTGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGA
TTATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCA
AGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATG
ATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGC
TGGGAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGG
TGCGTGGTGTGGCCATGAACCCAGTGGAGCATTCCTCATGGGAGGAGGTA
ACCA
back to top