CN185059

Overview
NameCN185059
Unique NameCN185059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:508..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.048e-41
Identity = 76/136 (55.88%), Postives = 97/136 (71.32%), Query Frame = -1
Query:  163 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 570
            Q+S+NYNY  C           NNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG G +A V++RIGF+  +C   G+ PGD++DC NQ+ +   L+ ++M
Sbjct:  201 QISYNYNYGPCGRAIGQNLL--NNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.048e-41
Identity = 76/136 (55.88%), Postives = 96/136 (70.59%), Query Frame = -1
Query:  163 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 570
            Q+S NYNY  C           NNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG G ++ V++RIGF+  +CG  G+ PGD+LDC NQR +G  L+  +M
Sbjct:  185 QISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.905e-41
Identity = 74/136 (54.41%), Postives = 96/136 (70.59%), Query Frame = -1
Query:  163 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 570
            Q+S NYNY  C           NNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG G ++ V++RIGF+  +CG  G+ PGD+LDC NQR +G  L+  ++
Sbjct:  183 QISHNYNYGPCGRAIGVDLL--NNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.019e-41
Identity = 76/139 (54.68%), Postives = 99/139 (71.22%), Query Frame = -1
Query:  154 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM*SS 570
            Q+SWNYNY +C           N PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG+G ++ V++RIGFF  +C   G+  G++LDCY+Q P+G +L+   + +S
Sbjct:  191 QISWNYNYGQCGRAIGVDLL--NKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.019e-41
Identity = 75/136 (55.15%), Postives = 96/136 (70.59%), Query Frame = -1
Query:  163 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 570
            Q+S NYNY  C           NNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG G ++ V++RIGF+  +CG  G+ PGD+LDC NQR +G  L+  ++
Sbjct:  185 QISHNYNYGPCGRAIGVDLL--NNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.538e-40
Identity = 78/132 (59.09%), Postives = 90/132 (68.18%), Query Frame = -1
Query:  178 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGG-NAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNL 570
            QLSWNYNY  C             P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ AGR+PGYG+ TNIINGGIECGQGG NAA  +RIGF+  +C   G   G +LDCY QRP+G  L
Sbjct:  204 QLSWNYNYGLCGDDLKLPLL--QEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.538e-40
Identity = 76/139 (54.68%), Postives = 98/139 (70.50%), Query Frame = -1
Query:  154 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM*SS 570
            Q+SWNYNY +C           N PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG+G ++ V++RIGFF  +C   G+  G++LDCY+Q P+G +L    + +S
Sbjct:  190 QISWNYNYGQCGRAIGVDLL--NKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.009e-40
Identity = 75/136 (55.15%), Postives = 97/136 (71.32%), Query Frame = -1
Query:  163 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 570
            Q+S NYNY  C           NNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGD+LDC NQR +G  L+  ++
Sbjct:  195 QISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.701e-39
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = -1
Query:  172 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMA 570
            QLS+NYNY             LNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG G +  V NRIGF+  +C   GI  G +LDCY+QRP+   L A
Sbjct:  202 QLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.456e-38
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            Q+++NYNY             LNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG G +  V +RIGF+  +C   G+  GD+LDCYNQRPY
Sbjct:  193 QITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
The following BLAST results are available for this feature:
BLAST of CN185059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI3_TOBAC4.048e-4155.88Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI1_SOLTU4.048e-4155.88Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU6.905e-4154.41Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_PHAVU9.019e-4154.68Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI3_SOLTU9.019e-4155.15Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI6_POPTR1.538e-4059.09Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI5_PHAVU1.538e-4054.68Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIT_SOLTU2.009e-4055.15Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI9_ORYSJ1.701e-3956.39Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ2.456e-3856.69Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185059 ID=CN185059; Name=CN185059; organism=Citrus sinensis; type=EST; length=570bp
GAGGCTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATA
AGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGACATCT
AAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGA
TCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGTCGTT
GGTTGTAGCAATCAAGACTGTCACCAGGCTGAATCCCAAACTTGCCACAG
AAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGGCATTCCCACCTTG
GCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCG
GAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATA
ATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCA
GATTGCTGACTTGAATGATAGTACTGGATCAGTAGCAAGAAGGTCTGGAT
TGTTCAACAACTCCTCTCCTAGCCCTAGGCCTTCTCCGCACCGTAAGTAA
TTGTAATTCCAAGAGAGTTG
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