CN185059

Overview
NameCN185059
Unique NameCN185059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:508..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.189e-38
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = -1
Query:  175 NYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGG-NAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLM 558
            NYNY  C             P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECGQGG N A  NRIGF+ T+C   G   G +LDCY QRP+G  L+
Sbjct:  171 NYNYGLCGDDLNLPLL--QEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.592e-37
Identity = 70/128 (54.69%), Postives = 88/128 (68.75%), Query Frame = -1
Query:  187 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 570
            Q+S+NYNY              NNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC  G NA + NRIGF+  +C   G+ PG++LDC NQRP+G
Sbjct:  121 QISYNYNYGAAGSAIGVNLL--NNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.632e-37
Identity = 71/136 (52.21%), Postives = 93/136 (68.38%), Query Frame = -1
Query:  163 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQSM 570
            Q+S+NYNY +            NNPDL+ATD V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G++LDC NQRP+G  L+  ++
Sbjct:  181 QISYNYNYGQAGKAIGVDLV--NNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.632e-37
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QL+   NY R           +NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G++LDC NQ+ +
Sbjct:  124 QLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.632e-37
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            Q+S+NYNY             L+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG G ++ V +RIGF+  +C   G+  G +LDCYNQRP+
Sbjct:  197 QISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 72/127 (56.69%), Postives = 88/127 (69.29%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QLS NYNY             L NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG G ++ V +RIGF+  +C   G+  GD+LDCYNQRP+
Sbjct:  141 QLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = -1
Query:  187 NNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 504
            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG G N AV +RIG++  +CG   + PG++LDCYNQR +G
Sbjct:  146 NNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = -1
Query:  190 NNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 504
            NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PGD+LDCY+QR +
Sbjct:  140 NNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.002e-36
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = -1
Query:  190 NNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 504
            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG G NAAV +RIG++  +CG   + PGD+LDCYNQR +
Sbjct:  146 NNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.002e-36
Identity = 71/127 (55.91%), Postives = 87/127 (68.50%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QLS+N+NY             L+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG G +  V NRIGF+  +CG FGI  G +LDCYNQRP+
Sbjct:  205 QLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
The following BLAST results are available for this feature:
BLAST of CN185059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_POPTR4.189e-3856.59Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHID_SOLLC1.592e-3754.69Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_VITVI4.632e-3752.21Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIA_SOLCI4.632e-3753.54Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI1_ORYSJ4.632e-3753.54Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE1.032e-3656.69Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIQ_TOBAC1.348e-3663.21Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_SOLLC2.299e-3662.86Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC3.002e-3663.81Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI2_ORYSJ3.002e-3655.91Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185059 ID=CN185059; Name=CN185059; organism=Citrus sinensis; type=EST; length=570bp
GAGGCTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATA
AGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGACATCT
AAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGA
TCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGTCGTT
GGTTGTAGCAATCAAGACTGTCACCAGGCTGAATCCCAAACTTGCCACAG
AAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGGCATTCCCACCTTG
GCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCG
GAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATA
ATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCA
GATTGCTGACTTGAATGATAGTACTGGATCAGTAGCAAGAAGGTCTGGAT
TGTTCAACAACTCCTCTCCTAGCCCTAGGCCTTCTCCGCACCGTAAGTAA
TTGTAATTCCAAGAGAGTTG
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