CN185059

Overview
NameCN185059
Unique NameCN185059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:508..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.921e-36
Identity = 67/127 (52.76%), Postives = 84/127 (66.14%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QL+   NY R           +NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G++LDC NQ+ +
Sbjct:  124 QLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 3.921e-36
Identity = 70/127 (55.12%), Postives = 89/127 (70.08%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QLS NYNY             L NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG G ++ V +RIGF+  +C   G+  G++LDCY+QRP+
Sbjct:  193 QLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.735e-36
Identity = 70/127 (55.12%), Postives = 88/127 (69.29%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QLS NYNY             L NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG G ++ V +RIGF+  +C    +  G++LDCYNQRP+
Sbjct:  196 QLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.141e-35
Identity = 70/127 (55.12%), Postives = 88/127 (69.29%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QL+ NYNY             +NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG G +  V +R+GF+  +C  FG+ PG +LDC NQR +
Sbjct:  195 QLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.141e-35
Identity = 70/127 (55.12%), Postives = 87/127 (68.50%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QLS NYNY               NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG G ++ V +RIGF+  +C   G+  G++LDCY+QRP+
Sbjct:  141 QLSHNYNYGPAGRAIGVDLLA--NPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.335e-35
Identity = 65/105 (61.90%), Postives = 79/105 (75.24%), Query Frame = -1
Query:  190 NNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 504
            NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG+G NA V +RIG++        + PGD+LDCYNQR +
Sbjct:  147 NNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.395e-35
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  244 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCG 570
            Q+S NYNY  C           NNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +CG
Sbjct:  195 QISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.152e-34
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = -1
Query:  190 NPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 501
            NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG G N A  +RIG++  +C   G   G +LDCYNQR +
Sbjct:  156 NPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.810e-34
Identity = 64/129 (49.61%), Postives = 91/129 (70.54%), Query Frame = -1
Query:  187 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQG-GNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 570
            QL+  YNY              NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG+G      ++R+G++  +C  F +  GD++ C +Q+PYG
Sbjct:  128 QLTHKYNYQLAGDALGLDLV--NNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.068e-33
Identity = 66/128 (51.56%), Postives = 86/128 (67.19%), Query Frame = -1
Query:  187 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 570
            QLS+N+NY             L +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+    +LDCY+QRP+G
Sbjct:  200 QLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
The following BLAST results are available for this feature:
BLAST of CN185059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLLC3.921e-3652.76Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI1_HORVU3.921e-3655.1226 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE8.735e-3655.12Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIX_PEA1.141e-3555.12Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_HORVU1.141e-3555.1226 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIT_PETHY4.335e-3561.90Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI4_SOLTU7.395e-3561.47Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI8_ORYSJ2.152e-3462.50Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ2.810e-3449.61Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI12_ORYSJ1.068e-3351.56Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185059 ID=CN185059; Name=CN185059; organism=Citrus sinensis; type=EST; length=570bp
GAGGCTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATA
AGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGACATCT
AAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGA
TCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGTCGTT
GGTTGTAGCAATCAAGACTGTCACCAGGCTGAATCCCAAACTTGCCACAG
AAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGGCATTCCCACCTTG
GCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCG
GAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATA
ATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCA
GATTGCTGACTTGAATGATAGTACTGGATCAGTAGCAAGAAGGTCTGGAT
TGTTCAACAACTCCTCTCCTAGCCCTAGGCCTTCTCCGCACCGTAAGTAA
TTGTAATTCCAAGAGAGTTG
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